User:Vincent Rouilly
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Vincent Rouilly Department of Bioengineering email: vincent.rouilly (at) ic.ac.uk
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Phd student at Imperial College London under the supervision of Prof R.Kitney. The research project deals with modelling multicellular Synthetic Biology systems. We are implementing a framework allowing to model from gene expression to cell population behaviour.
Education
- PhD candidate at Imperial College London
- M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid.
Research Interests
- Computational Biology: stochastic processes, Petri Nets, Agent Based modelling.
- Synthetic Biology and the wetlab work involved.
- Laboratory Information System.
OWW Contributions
- Lab Automation Review
- Stochastic Gene Expression
- Registry of Standard Models
- Registry of Standard Models/Architecture
- Catalog of standard models in CellML
- Basic Components in CellML
- iGEM@imperial project framework
- iGEM@imperial Instructor
- iGEM@imperial template to document a part
- IGEM WetLab Planning Tool
- OWW Image Annotation Tool
Other:
OWW ideas (random)
building a stronger community
- get people to define on their User page their area(s) of interest using 'wiki-categories' (could help to find collaborators).
- if people defines their area of interest using references, would be interesting to use that information to match people's profiles.
support to find relevant info
- 'contextual' browsing ('hacking' google-ads-type-of-service to show other relevant wiki-pages or wiki-users on the side of a wiki page ... instead of ads).
- set essential keywords pages. 'Experts', in a given field, would recommend a set of keywords to help new comers to google more efficiently.
- setting-up a calendar with info about conferences, workshops, submission deadlines ...
adding features
- implementing java applets which are enable to read/write an xml-like format into the wiki:
- image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
- graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)
Project
Here is an overview of the modelling framework I am working on:
Who is visiting my page?
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