User:Viswanadham Sridhara: Difference between revisions

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[[Image:Viswanadham.png|thumb|right|Viswanadham Sridhara (an artistic interpretation)]]
[[Image:Viswanadham.png|thumb|right|Viswanadham Sridhara (an artistic interpretation)]]


*Viswanadham Sridhara
Viswanadham SRIDHARA
*The University of Texas at Austin
*2415 Speedway, C4500
*Austin, TX, 78731.
*[[Special:Emailuser/Viswanadham Sridhara|Email me through OpenWetWare]]


I work both at [[http://ccbb.biosci.utexas.edu/index.html CCBB]] and in [[http://wilke.openwetware.org/ Wilke Lab]] at The University of Texas at Austin.
Bioinformatics Research Scientist
 
Center for Computational Biology and Bioinformatics
 
Email: {FirstName}.{LastName}@gmail.com
 
Affiliations: [[http://ccbb.biosci.utexas.edu/index.html CCBB]] and [[http://wilke.openwetware.org/ Wilke Lab]] at UT Austin.


==Education==
==Education==
<!--Include info about your educational background-->
<!--Include info about your educational background-->
* 2012, Post-doc, Computational Biology, [[http://www.ncbi.nlm.nih.gov/Structure/structure_research.html NCBI Structure Group]], NIH
* 2012, Post-doc, Computational Biology, [[http://www.ncbi.nlm.nih.gov/Structure/structure_research.html NCBI Structure Group]], NIH
* 2007, PhD, Electrical and Computer Engineering, Old Dominion University
* 2007, PhD, Electrical and Computer Engineering
* 2003, MS,  Electrical and Computer Engineering, Old Dominion University


==Research interests==
==Research interests==
<!-- Feel free to add brief descriptions to your research interests as well -->
<!-- Feel free to add brief descriptions to your research interests as well -->
# OMICS Data Analysis using Genome-based Metabolic Networks
# ''E. coli'' modeling using systems biology approaches (flux balance modeling)
# Mass-Spectrometry based Proteomics/Metabolomics
# Mass-spectrometry based proteomics and metabolomics (PTM and metabolic flux analysis)
# Molecular Dynamics Simulations
# Molecular dynamics simulations for Bio-electrics applications (nsPEF effects on lipid bilayers)


==Publications==
==Selected Publications==
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
<biblio>
<biblio>
#Paper1 pmid=22321509
#Paper1 Sridhara V et. al., [[http://biorxiv.org/content/early/2014/01/31/002287.1 Predicting bacterial growth conditions from bacterial physiology]]
#Paper2 pmid=21571812
#Paper2 pmid=21571812
#Paper3 pmid=17706595
#Paper3 pmid=22321509
#Paper4 pmid=17500934
# Paper4 pmid=24680651
#Paper5 pmid=17123870
# Paper5 pmid=24239610
#Paper6 pmid=16890913
#Papers [Papers linked in Google Scholar] [http://scholar.google.com/citations?sortby=pubdate&hl=en&user=UBvhRHgAAAAJ&view_op=list_works]
#Paper7 pmid=15903466
#Papers [[http://scholar.google.com/citations?user=UBvhRHgAAAAJ&hl=en List of all publications]]
</biblio>
</biblio>


==Useful links==
==Useful links==
*[[http://www.ncbi.nlm.nih.gov/pubmed/ PUBMED]]
*[[http://www.ncbi.nlm.nih.gov/pubmed/ PUBMED]]

Revision as of 20:34, 21 June 2014

I am a new member of OpenWetWare!

Contact Info

Viswanadham Sridhara (an artistic interpretation)

Viswanadham SRIDHARA

Bioinformatics Research Scientist

Center for Computational Biology and Bioinformatics

Email: {FirstName}.{LastName}@gmail.com

Affiliations: [CCBB] and [Wilke Lab] at UT Austin.

Education

  • 2012, Post-doc, Computational Biology, [NCBI Structure Group], NIH
  • 2007, PhD, Electrical and Computer Engineering

Research interests

  1. E. coli modeling using systems biology approaches (flux balance modeling)
  2. Mass-spectrometry based proteomics and metabolomics (PTM and metabolic flux analysis)
  3. Molecular dynamics simulations for Bio-electrics applications (nsPEF effects on lipid bilayers)

Selected Publications

  1. Sridhara V et. al., [Predicting bacterial growth conditions from bacterial physiology]

    [Paper1]
  2. Sridhara V, Marchler-Bauer A, Bryant SH, and Geer LY. Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes. Database (Oxford). 2011;2011:bar019. DOI:10.1093/database/bar019 | PubMed ID:21571812 | HubMed [Paper2]
  3. Sridhara V, Bai DL, Chi A, Shabanowitz J, Hunt DF, Bryant SH, and Geer LY. Increasing peptide identifications and decreasing search times for ETD spectra by pre-processing and calculation of parent precursor charge. Proteome Sci. 2012 Feb 9;10(1):8. DOI:10.1186/1477-5956-10-8 | PubMed ID:22321509 | HubMed [Paper3]
  4. Sridhara V and Joshi RP. Evaluations of a mechanistic hypothesis for the influence of extracellular ions on electroporation due to high-intensity, nanosecond pulsing. Biochim Biophys Acta. 2014 Jul;1838(7):1793-800. DOI:10.1016/j.bbamem.2014.03.010 | PubMed ID:24680651 | HubMed [Paper4]
  5. Sridhara V and Joshi RP. Numerical study of lipid translocation driven by nanoporation due to multiple high-intensity, ultrashort electrical pulses. Biochim Biophys Acta. 2014 Mar;1838(3):902-9. DOI:10.1016/j.bbamem.2013.11.003 | PubMed ID:24239610 | HubMed [Paper5]

  6. [Papers linked in Google Scholar] [1]

    [Papers]

All Medline abstracts: PubMed | HubMed

Useful links

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