User:Yun-Peng Xu: Difference between revisions
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==Contact Info== | ==Contact Info== | ||
[[Image: | [[Image:Photo_Peng.jpg|right|thumb]] | ||
*Peng Xu | *Peng Xu | ||
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*[[Special:Emailuser/Peng Daniel Xu|pxu999 at gmail dot com]] | *[[Special:Emailuser/Peng Daniel Xu|pxu999 at gmail dot com]] | ||
I work in the [ | I work in the [http://koffasresearch.wordpress.com/lab-members/ Koffas group] at [http://www.rpi.edu/ Rensselaer Polytechnic Institute]. Before we moved to RPI at February 2011, I have studied at the [http://www.buffalo.edu/ State University of New York at Buffalo] for two and a half years. My PhD projects involve developing synthetic biology tools to engineer the microbial synthesis of natural products and fuel molecules in ''E. coli''. | ||
==Education== | ==Education== | ||
<!--Include info about your educational background--> | <!--Include info about your educational background--> | ||
* | * May, 2013 (expected),PhD in Chemical Engineering, [http://www.rpi.edu/ Rensselaer Polytechnic Institute] | ||
* 2006, MS in Biochemical Engineering, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University) | * 2006, MS in Biochemical Engineering, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University) | ||
* 2003, BS in Biotechnology, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University) | * 2003, BS in Biotechnology, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University) | ||
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<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications. You can add or remove lines as needed --> | <!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications. You can add or remove lines as needed --> | ||
[http://www.researcherid.com/rid/C-6440-2011 My research ID profile] | [http://www.researcherid.com/rid/C-6440-2011 My research ID profile] | ||
# Xu, P; Ding, ZY; Qian, Z; et al. [http:// | # Xu P, Gu Q; Wang W, Wong L, Bower A, Collins CH and Koffas MA. (2013) [http://dx.doi.org/10.1038/ncomms2425 Modular optimization of multi-gene pathway for fatty acids production in ''E. coli'']. Nature Communications, 4: 1409. | ||
# Zhang, TX; Xu, P; Sun, J; et al. [http:// | # Bhan N, Xu P, Khalidi O and Koffas MAG. (2013) [http://dx.doi.org/10.1016/j.ces.2012.10.009 Redirecting carbon flux into Malonyl-CoA to improve Resveratrol titers: Proof of concept for genetic interventions predicted by OptForce computational framework]. Chemical Engineering Science, Accepted manuscript, In press | ||
# Xu P and Koffas MA. (2013) Assembly of multi-gene pathways and combinatorial pathway libraries through ePathBrick vectors. Book chapter in Methods in Molecular Biology: Synthetic Biology. | |||
# Xu, Peng; Bhan, Namita; Koffas, Mattheos A.G. (2013) [http://dx.doi.org/10.1016/j.copbio.2012.08.010 Engineering plant metabolism into microbes: from systems biology to synthetic biology]. Current Opinion in Biotechnology, 24(2), pp xxx-yyy. [http://koffasresearch.files.wordpress.com/2012/09/2012-08-010.pdf PDF] | |||
# Xu, Peng; Vansiri, Amerin; Bhan, Namita; Koffas, Mattheos A.G. (2012) [http://dx.doi.org/doi:10.1021/sb300016b ePathBrick: A synthetic biology platform for engineering metabolic pathways in E. coli]. ACS Synthetic Biology,1 (7), pp 256–266.[http://koffasresearch.files.wordpress.com/2012/07/epathbrick.pdf PDF] | |||
# Xu, Peng; Ranganathan, Sridhar; Fowler, Zachary; Maranas, Costas D.; Koffas, Mattheos A.G. (2011) [http://dx.doi.org/doi:10.1016/j.ymben.2011.06.008 Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA]. Metabolic Engineering, Volume: 13 Issue: 5 Pages: 578-587. [http://koffasresearch.files.wordpress.com/2012/07/malonyl-coa.pdf PDF] | |||
# Xu, Peng; Koffas, Mattheos A. G. (2010) [http://dx.doi.org/doi:10.4155/bfs.10.13 Metabolic engineering of Escherichia coli for biofuel production], Biofuels, Volume: 1 Issue: 3 Pages: 493-504. [http://koffasresearch.files.wordpress.com/2012/07/biofuels.pdf PDF] | |||
# Zhang, Liang; Ding, Zhongyang; Xu, Peng; et al. (2011) [http://dx.doi.org/doi:10.1007/s12257-010-0345-z Methyl lucidenate F isolated from the ethanol-soluble-acidic components of Ganoderma lucidum is a novel tyrosinase inhibitor],Biotechnology and Bioprocess Engineering, Volume: 16 Issue: 3 Pages: 457-461. [https://docs.google.com/open?id=0B4wZIrGHL-wBZTU5YTQ1NDQtMzBlMy00NmRjLThlNjktMTdiNzY2OTY4YzM2 PDF] | |||
# Xu, Peng; Ding, ZY; Qian, Z; et al. (2008) [http://dx.doi.org/doi:10.1016/j.enzmictec.2007.10.016 Improved production of mycelial biomass and ganoderic acid by submerged culture of Ganoderma lucidum SB97 using complex media], Enzyme and Microbial Technology, Volume: 42 Issue: 4 Pages: 325-331. [https://docs.google.com/viewer?a=v&pid=explorer&chrome=true&srcid=0B4wZIrGHL-wBNmZhZTI1MDYtNzRkNS00ODczLTkwNTktZjM0ZmQxMmFhODE2&hl=en_US PDF] | |||
# Zhang, TX; Xu, P; Sun, J; et al. (2009) [http://dx.doi.org/doi:10.1094/ASBCJ-2008-1212-01 Identification of Biological Wort Turbidity Caused by Microbial Contamination of Gairdner Barley], Journal of the American Society of Brewing Chemists, Volume: 67 Issue: 1 Pages: 33-37 | |||
==Useful links== | ==Useful links== | ||
*[[OpenWetWare:Welcome|Introductory tutorial]] | *[[OpenWetWare:Welcome|Introductory tutorial]] | ||
*[[Help|OpenWetWare help pages]] | *[[Help|OpenWetWare help pages]] |
Revision as of 09:51, 29 January 2013
Contact Info
- Peng Xu
- Center for Biotechnology and Interdisciplinary Studies
- Chemical and Biological Engieering, Rensselaer Polytechnic Institute
- 110 Eighth Street
- Troy, NY 12180, USA.
- pxu999 at gmail dot com
I work in the Koffas group at Rensselaer Polytechnic Institute. Before we moved to RPI at February 2011, I have studied at the State University of New York at Buffalo for two and a half years. My PhD projects involve developing synthetic biology tools to engineer the microbial synthesis of natural products and fuel molecules in E. coli.
Education
- May, 2013 (expected),PhD in Chemical Engineering, Rensselaer Polytechnic Institute
- 2006, MS in Biochemical Engineering, Jiangnan University (Formerly Southern Yangtze University)
- 2003, BS in Biotechnology, Jiangnan University (Formerly Southern Yangtze University)
Research interests
- Metabolic engineering
- Synthetic biology
- Natural Products/Biofuels
- Biochemical/Bioprocess engineering
Publications
- Xu P, Gu Q; Wang W, Wong L, Bower A, Collins CH and Koffas MA. (2013) Modular optimization of multi-gene pathway for fatty acids production in E. coli. Nature Communications, 4: 1409.
- Bhan N, Xu P, Khalidi O and Koffas MAG. (2013) Redirecting carbon flux into Malonyl-CoA to improve Resveratrol titers: Proof of concept for genetic interventions predicted by OptForce computational framework. Chemical Engineering Science, Accepted manuscript, In press
- Xu P and Koffas MA. (2013) Assembly of multi-gene pathways and combinatorial pathway libraries through ePathBrick vectors. Book chapter in Methods in Molecular Biology: Synthetic Biology.
- Xu, Peng; Bhan, Namita; Koffas, Mattheos A.G. (2013) Engineering plant metabolism into microbes: from systems biology to synthetic biology. Current Opinion in Biotechnology, 24(2), pp xxx-yyy. PDF
- Xu, Peng; Vansiri, Amerin; Bhan, Namita; Koffas, Mattheos A.G. (2012) ePathBrick: A synthetic biology platform for engineering metabolic pathways in E. coli. ACS Synthetic Biology,1 (7), pp 256–266.PDF
- Xu, Peng; Ranganathan, Sridhar; Fowler, Zachary; Maranas, Costas D.; Koffas, Mattheos A.G. (2011) Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA. Metabolic Engineering, Volume: 13 Issue: 5 Pages: 578-587. PDF
- Xu, Peng; Koffas, Mattheos A. G. (2010) Metabolic engineering of Escherichia coli for biofuel production, Biofuels, Volume: 1 Issue: 3 Pages: 493-504. PDF
- Zhang, Liang; Ding, Zhongyang; Xu, Peng; et al. (2011) Methyl lucidenate F isolated from the ethanol-soluble-acidic components of Ganoderma lucidum is a novel tyrosinase inhibitor,Biotechnology and Bioprocess Engineering, Volume: 16 Issue: 3 Pages: 457-461. PDF
- Xu, Peng; Ding, ZY; Qian, Z; et al. (2008) Improved production of mycelial biomass and ganoderic acid by submerged culture of Ganoderma lucidum SB97 using complex media, Enzyme and Microbial Technology, Volume: 42 Issue: 4 Pages: 325-331. PDF
- Zhang, TX; Xu, P; Sun, J; et al. (2009) Identification of Biological Wort Turbidity Caused by Microbial Contamination of Gairdner Barley, Journal of the American Society of Brewing Chemists, Volume: 67 Issue: 1 Pages: 33-37