User talk:Darek Kedra/sandbox 27

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m (NGS reads simulation)
Current revision (18:10, 13 January 2013) (view source)
m (NGS reads simulation)
 
Line 19: Line 19:
* https://sourceforge.net/projects/gemsim/  
* https://sourceforge.net/projects/gemsim/  
* [http://flux.sammeth.net/simulator.html Flux Simulator]
* [http://flux.sammeth.net/simulator.html Flux Simulator]
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=new assemblers=
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ftp://ftp.genome.umd.edu/pub/MSR-CA/ water buffalo

Current revision

Fastq compression

  • dsrc (new, from 2011)

http://sun.aei.polsl.pl/dsrc/

  • Genomic Squeeze (G-SQueeZ)

http://www.tgen.org/research/gsqueez.cfm

  • bsc

http://libbsc.com/default.aspx

  • see the Bonfield page with comparisons:

http://seqanswers.com/forums/archive/index.php/t-6349.html


NGS reads simulation

new assemblers

ftp://ftp.genome.umd.edu/pub/MSR-CA/ water buffalo

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