Van Oudenaarden Lab:C08C3.1

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(New page: '''Progress:''' Probes designed: (03-01-2010 - Alexander van Oudenaarden) Probes coupled: Probes purified: Probes tested: Dyes available: ----)
Current revision (17:16, 1 March 2010) (view source)
 
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>C08C3.1a (egl-5 spliced coding region)
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aatctacagaataggctccgccttctttcaaattttggaaagcagtgagagtgagggattacggtacacaca
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atgaacacttcgacgagtgcattcgattttggctcgtcgacagcttcatcagctgccacgtcgacaacatcttcacaacc
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agatgccaatgatcatttatcgagacttgccgccatgacgcaaggagttggaaaagaagatccagaaacatcatcaactc
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catccacagaagccagtctttacccaggtatctcggctgcgtacatgcagagctacggctggccacagaactacaactac
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tttggtcaaccattgggccctgccacgtttcccggatggcctcagtgctatccgaatacggcgtggcccaactacgcatc
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atcaaagaaaggccgtcaaacgtatcaacgctatcaaacatcagttcttgaagcgaaattccaacagtcatcatacgtgt
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caaagaaacaacgtgaagagctccgcctgcagactcaattgacagatcgtcaaatcaaaatctggttccaaaatcgtcga
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atgaaggcgaaaaaagagaagcaaagagtagatgatcacacggaacatactccacttctaccggcaaatccaccaaaagg
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aatgggaatggatatggatgatgagaaaaaatggcaaatggctcattggccaccagcagctgcacacaatccatatcaat
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acccgttgtgtccaccgtaa
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----
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Name of probe set: egl-5
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Probes designed on Mon, 01 Mar 10 14:15:58 -0700
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33 probes designed for target of length 732 (target too short for 48 probes)
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Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
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cggagcctattctgtagatt, egl-5_1, 1, 1, 45
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gctttccaaaatttgaaaga, egl-5_2, 2, 24, 30
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accgtaatccctcactctca, egl-5_3, 3, 46, 50
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cgtcgaagtgttcattgtgt, egl-5_4, 4, 68, 45
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acgagccaaaatcgaatgca, egl-5_5, 5, 90, 45
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gtggcagctgatgaagctgt, egl-5_6, 6, 112, 55
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tggttgtgaagatgttgtcg, egl-5_7, 7, 134, 45
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ctcgataaatgatcattggc, egl-5_8, 8, 157, 40
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tccttgcgtcatggcggcaa, egl-5_9, 9, 179, 60
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gtttctggatcttcttttcc, egl-5_10, 10, 202, 40
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ttctgtggatggagttgatg, egl-5_11, 11, 224, 45
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agatacctgggtaaagactg, egl-5_12, 12, 246, 45
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tagctctgcatgtacgcagc, egl-5_13, 13, 268, 55
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agttgtagttctgtggccag, egl-5_14, 14, 291, 50
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gggcccaatggttgaccaaa, egl-5_15, 15, 313, 55
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aggccatccgggaaacgtgg, egl-5_16, 16, 335, 65
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acgccgtattcggatagcac, egl-5_17, 17, 357, 55
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tttgatgatgcgtagttggg, egl-5_18, 18, 379, 45
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ttgatacgtttgacggcctt, egl-5_19, 19, 401, 45
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caagaactgatgtttgatag, egl-5_20, 20, 423, 35
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gatgactgttggaatttcgc, egl-5_21, 21, 445, 45
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acgttgtttctttgacacgt, egl-5_22, 22, 467, 40
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gagtctgcaggcggagctct, egl-5_23, 23, 489, 65
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ttgatttgacgatctgtcaa, egl-5_24, 24, 511, 35
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tcgacgattttggaaccaga, egl-5_25, 25, 533, 45
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gcttctcttttttcgccttc, egl-5_26, 26, 555, 45
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tccgtgtgatcatctactct, egl-5_27, 27, 577, 45
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tgccggtagaagtggagtat, egl-5_28, 28, 599, 50
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ttcccattccttttggtgga, egl-5_29, 29, 621, 45
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tttttctcatcatccatatc, egl-5_30, 30, 643, 30
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tggccaatgagccatttgcc, egl-5_31, 31, 665, 55
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atggattgtgtgcagctgct, egl-5_32, 32, 687, 50
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ggtggacacaacgggtattg, egl-5_33, 33, 709, 55

Current revision

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:


>C08C3.1a (egl-5 spliced coding region)

aatctacagaataggctccgccttctttcaaattttggaaagcagtgagagtgagggattacggtacacaca

atgaacacttcgacgagtgcattcgattttggctcgtcgacagcttcatcagctgccacgtcgacaacatcttcacaacc agatgccaatgatcatttatcgagacttgccgccatgacgcaaggagttggaaaagaagatccagaaacatcatcaactc catccacagaagccagtctttacccaggtatctcggctgcgtacatgcagagctacggctggccacagaactacaactac tttggtcaaccattgggccctgccacgtttcccggatggcctcagtgctatccgaatacggcgtggcccaactacgcatc atcaaagaaaggccgtcaaacgtatcaacgctatcaaacatcagttcttgaagcgaaattccaacagtcatcatacgtgt caaagaaacaacgtgaagagctccgcctgcagactcaattgacagatcgtcaaatcaaaatctggttccaaaatcgtcga atgaaggcgaaaaaagagaagcaaagagtagatgatcacacggaacatactccacttctaccggcaaatccaccaaaagg aatgggaatggatatggatgatgagaaaaaatggcaaatggctcattggccaccagcagctgcacacaatccatatcaat acccgttgtgtccaccgtaa


Name of probe set: egl-5

Probes designed on Mon, 01 Mar 10 14:15:58 -0700

33 probes designed for target of length 732 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

cggagcctattctgtagatt, egl-5_1, 1, 1, 45

gctttccaaaatttgaaaga, egl-5_2, 2, 24, 30

accgtaatccctcactctca, egl-5_3, 3, 46, 50

cgtcgaagtgttcattgtgt, egl-5_4, 4, 68, 45

acgagccaaaatcgaatgca, egl-5_5, 5, 90, 45

gtggcagctgatgaagctgt, egl-5_6, 6, 112, 55

tggttgtgaagatgttgtcg, egl-5_7, 7, 134, 45

ctcgataaatgatcattggc, egl-5_8, 8, 157, 40

tccttgcgtcatggcggcaa, egl-5_9, 9, 179, 60

gtttctggatcttcttttcc, egl-5_10, 10, 202, 40

ttctgtggatggagttgatg, egl-5_11, 11, 224, 45

agatacctgggtaaagactg, egl-5_12, 12, 246, 45

tagctctgcatgtacgcagc, egl-5_13, 13, 268, 55

agttgtagttctgtggccag, egl-5_14, 14, 291, 50

gggcccaatggttgaccaaa, egl-5_15, 15, 313, 55

aggccatccgggaaacgtgg, egl-5_16, 16, 335, 65

acgccgtattcggatagcac, egl-5_17, 17, 357, 55

tttgatgatgcgtagttggg, egl-5_18, 18, 379, 45

ttgatacgtttgacggcctt, egl-5_19, 19, 401, 45

caagaactgatgtttgatag, egl-5_20, 20, 423, 35

gatgactgttggaatttcgc, egl-5_21, 21, 445, 45

acgttgtttctttgacacgt, egl-5_22, 22, 467, 40

gagtctgcaggcggagctct, egl-5_23, 23, 489, 65

ttgatttgacgatctgtcaa, egl-5_24, 24, 511, 35

tcgacgattttggaaccaga, egl-5_25, 25, 533, 45

gcttctcttttttcgccttc, egl-5_26, 26, 555, 45

tccgtgtgatcatctactct, egl-5_27, 27, 577, 45

tgccggtagaagtggagtat, egl-5_28, 28, 599, 50

ttcccattccttttggtgga, egl-5_29, 29, 621, 45

tttttctcatcatccatatc, egl-5_30, 30, 643, 30

tggccaatgagccatttgcc, egl-5_31, 31, 665, 55

atggattgtgtgcagctgct, egl-5_32, 32, 687, 50

ggtggacacaacgggtattg, egl-5_33, 33, 709, 55

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