Van Oudenaarden Lab:C13G5.1

Progress:

Probes designed: (02-28-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

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>C13G5.1 (ceh-16 spliced coding region + 5'-UTR)

atggacgatgagggggagtttgtgttgtatctccgttcactgaccggttaatcagtgaggtgctactcgtttttttcttt gtttgagaattaatgttgatcaacaatacttaggtgaacatttgaattaatggcattttacccaaagtttcgaactcgaa tatcctattttactggggttttgcactattttccatttattgtaaattcattttatttattttttcagaa

atgattctgaaattcggtattgaacgaatcctgtcttccccctacccttgcccatctccaactatttcaactcctgctac aagtccatcaagtatttctcctacttttgcatctccaaatggaacaccaaatattgcgtcaagtatgtatcctgcatggg tgttcagcacaagatattccgatcgaccatctgcaggccctcgacatcgaaaatcccgaaaacgagaatcaactggaagt agtggaagttcagaagaagaaaaaagaccacgtactgcattcactggagatcaattggaccggctcaaaactgaattccg ggaaagcagatatctaacagaaaagcggcgacaagaattggctcacgagctcggactcaacgaatcgcagatcaaaatct ggttccagaacaagcgtgccaaactcaaaaagtcgacatcttctgttccaagagatcgatgctcctccgtcactccaaat cctcataatcatccgtcaattcatggaggatatcaacttatggctcagttggcaaaggttcaggctcgagcttacatgcc atga

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Name of probe set: ceh-16

Probes designed on Sun, 28 Feb 10 19:02:36 -0700

36 probes designed for target of length 794 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

aactccccctcatcgtccat, ceh-16_1, 1, 1, 55

cagtgaacggagatacaaca, ceh-16_2, 2, 23, 45

tagcacctcactgattaacc, ceh-16_3, 3, 46, 45

ctcaaacaaagaaaaaaacg, ceh-16_4, 4, 68, 30

gtattgttgatcaacattaa, ceh-16_5, 5, 90, 25

attaattcaaatgttcacct, ceh-16_6, 6, 112, 25

tcgaaactttgggtaaaatg, ceh-16_7, 7, 134, 35

cagtaaaataggatattcga, ceh-16_8, 8, 156, 30

aatggaaaatagtgcaaaac, ceh-16_9, 9, 178, 30

taaataaaatgaatttacaa, ceh-16_10, 10, 200, 10

ttcagaatcatttctgaaaa, ceh-16_11, 11, 222, 25

caggattcgttcaataccga, ceh-16_12, 12, 244, 45

atgggcaagggtagggggaa, ceh-16_13, 13, 266, 60

gcaggagttgaaatagttgg, ceh-16_14, 14, 288, 45

agaaatacttgatggacttg, ceh-16_15, 15, 310, 35

catttggagatgcaaaagta, ceh-16_16, 16, 332, 35

cttgacgcaatatttggtgt, ceh-16_17, 17, 354, 40

gaacacccatgcaggataca, ceh-16_18, 18, 376, 50

gtcgatcggaatatcttgtg, ceh-16_19, 19, 398, 45

cgatgtcgagggcctgcaga, ceh-16_20, 20, 420, 65

tgattctcgttttcgggatt, ceh-16_21, 21, 442, 40

ctgaacttccactacttcca, ceh-16_22, 22, 464, 45

gtacgtggtcttttttcttc, ceh-16_23, 23, 486, 40

caattgatctccagtgaatg, ceh-16_24, 24, 508, 40

ggaattcagttttgagccgg, ceh-16_25, 25, 530, 50

tctgttagatatctgctttc, ceh-16_26, 26, 552, 35

agccaattcttgtcgccgct, ceh-16_27, 27, 574, 55

attcgttgagtccgagctcg, ceh-16_28, 28, 596, 55

tggaaccagattttgatctg, ceh-16_29, 29, 618, 40

tttgagtttggcacgcttgt, ceh-16_30, 30, 640, 45

ttggaacagaagatgtcgac, ceh-16_31, 31, 662, 45

gtgacggaggagcatcgatc, ceh-16_32, 32, 684, 60

cggatgattatgaggatttg, ceh-16_33, 33, 706, 40

gttgatatcctccatgaatt, ceh-16_34, 34, 728, 35

acctttgccaactgagccat, ceh-16_35, 35, 750, 50

tggcatgtaagctcgagcct, ceh-16_36, 36, 772, 55