Van Oudenaarden Lab:C18B12.3

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(New page: '''Progress:''' Probes designed: (03-01-2010 - Alexander van Oudenaarden) Probes coupled: Probes purified: Probes tested: Dyes available: ----)
Current revision (17:14, 1 March 2010) (view source)
 
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>C18B12.3 (dsc-1 spliced coding region)
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atgaaccctcataccaacctcaacaacgtattcgactttcctgatctcccgatgctacttccaaaatcagaagctttgtc
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tgtaaccaccgatttttctgtgccaccagtgcaacagggagctcaacaattccacccgccgcgcaatctgggaccacagc
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ttgctcgtcgctggagctgcggcgattcacagcatgccgacgaaccgcccgcctcctactaccataacctcggcgtcgcc
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cttcataaccactttcaaatgtcgaatcagcattatttatcggattttgattgtccaacaacggtttcaccgatttcatc
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tgcacatgaaactgggcaattgccacaattgagtccgtatgatcatattggaaatcaggatccgcatatgttctctcccc
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atgcttatggaaactctatgattcctgacaattcatattttgaaaatgcgtcacgctccatctctgcaccaaacgttggc
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aattcaactctgaacccttctctgatgtcaagcgacaatgctcaaagttgtggaggccgacgaagattcagaaccaactt
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caccgaacttcaatccaccttccttgaagattcattcaaagaatcacactacccggatcacaaggccaaaaagtatatgg
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ctgactttttgaaaattccagaggatcgtatcacggtatggtttcaaaaccgacgcgcaaaatggagaaggaaggagcac
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cgtcaacgggatcgcactcggaatgaatctttcagtggaggatcaaactcgtttgattttgcgtgtttttctgcgcaaca
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tccagatgatggtccgaatgcaaagcatccaaattcttttggtattcccaatcaaccgatgtcccttgaccaattcccaa
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tgaacactgaacaagattttcctgaatttccaagcctacaggagcatcaataa
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ggcatcgatatactatctcaatatcatttatttggatttttt
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aagttgaaattttggttgttttttcttcctcttagaacaaatcaaaaagccagtttgtacctgttatacagatcaagaaa
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tatgtattttgcaattttctatgttattttttgacttttcatctatatatttttcgtttgtatatgtgattatgtgctta
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ttctagattttcatatcactttttaaccgttagttttgtcagataattagataatattaataaataaaaccattc
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----
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Name of probe set: dsc-1
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Probes designed on Mon, 01 Mar 10 14:13:32 -0700
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48 probes designed for target of length 1210
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Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
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aggttggtatgagggttcat, dsc-1_1, 1, 1, 45
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caggaaagtcgaatacgttg, dsc-1_2, 2, 24, 45
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tttggaagtagcatcgggag, dsc-1_3, 3, 46, 50
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ggttacagacaaagcttctg, dsc-1_4, 4, 68, 45
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actggtggcacagaaaaatc, dsc-1_5, 5, 91, 45
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gaattgttgagctccctgtt, dsc-1_6, 6, 113, 45
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aagctgtggtcccagattgc, dsc-1_7, 7, 143, 55
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ttcgtcggcatgctgtgaat, dsc-1_8, 8, 185, 50
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aggttatggtagtaggaggc, dsc-1_9, 9, 211, 50
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agtggttatgaagggcgacg, dsc-1_10, 10, 234, 55
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taatgctgattcgacatttg, dsc-1_11, 11, 256, 35
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gttggacaatcaaaatccga, dsc-1_12, 12, 280, 40
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agatgaaatcggtgaaaccg, dsc-1_13, 13, 302, 45
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gcaattgcccagtttcatgt, dsc-1_14, 14, 324, 45
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tgatcatacggactcaattg, dsc-1_15, 15, 346, 40
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atgcggatcctgatttccaa, dsc-1_16, 16, 368, 45
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tttccataagcatggggaga, dsc-1_17, 17, 394, 45
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tgaattgtcaggaatcatag, dsc-1_18, 18, 416, 35
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agcgtgacgcattttcaaaa, dsc-1_19, 19, 438, 40
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ccaacgtttggtgcagagat, dsc-1_20, 20, 460, 50
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gagaagggttcagagttgaa, dsc-1_21, 21, 483, 45
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tgagcattgtcgcttgacat, dsc-1_22, 22, 505, 45
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atcttcgtcggcctccacaa, dsc-1_23, 23, 528, 55
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agttcggtgaagttggttct, dsc-1_24, 24, 550, 45
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gaatcttcaaggaaggtgga, dsc-1_25, 25, 574, 45
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cgggtagtgtgattctttga, dsc-1_26, 26, 596, 45
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tatactttttggccttgtga, dsc-1_27, 27, 618, 35
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ggaattttcaaaaagtcagc, dsc-1_28, 28, 640, 35
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ccataccgtgatacgatcct, dsc-1_29, 29, 662, 50
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attttgcgcgtcggttttga, dsc-1_30, 30, 684, 45
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tgacggtgctccttccttct, dsc-1_31, 31, 706, 55
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attcattccgagtgcgatcc, dsc-1_32, 32, 729, 50
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gagtttgatcctccactgaa, dsc-1_33, 33, 751, 45
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gcagaaaaacacgcaaaatc, dsc-1_34, 34, 775, 40
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cggaccatcatctggatgtt, dsc-1_35, 35, 797, 50
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aagaatttggatgctttgca, dsc-1_36, 36, 819, 35
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atcggttgattgggaatacc, dsc-1_37, 37, 841, 45
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cattgggaattggtcaaggg, dsc-1_38, 38, 863, 50
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caggaaaatcttgttcagtg, dsc-1_39, 39, 885, 40
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attgatgctcctgtaggctt, dsc-1_40, 40, 912, 45
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tgagatagtatatcgatgcc, dsc-1_41, 41, 934, 40
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gaggaagaaaaaacaaccaa, dsc-1_42, 42, 987, 35
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ctggctttttgatttgttct, dsc-1_43, 43, 1009, 35
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tgatctgtataacaggtaca, dsc-1_44, 44, 1031, 35
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catagaaaattgcaaaatac, dsc-1_45, 45, 1059, 25
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cacatatacaaacgaaaaat, dsc-1_46, 46, 1104, 25
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gaaaatctagaataagcaca, dsc-1_47, 47, 1128, 30
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ctgacaaaactaacggttaa, dsc-1_48, 48, 1158, 35

Current revision

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:


>C18B12.3 (dsc-1 spliced coding region)

atgaaccctcataccaacctcaacaacgtattcgactttcctgatctcccgatgctacttccaaaatcagaagctttgtc tgtaaccaccgatttttctgtgccaccagtgcaacagggagctcaacaattccacccgccgcgcaatctgggaccacagc ttgctcgtcgctggagctgcggcgattcacagcatgccgacgaaccgcccgcctcctactaccataacctcggcgtcgcc cttcataaccactttcaaatgtcgaatcagcattatttatcggattttgattgtccaacaacggtttcaccgatttcatc tgcacatgaaactgggcaattgccacaattgagtccgtatgatcatattggaaatcaggatccgcatatgttctctcccc atgcttatggaaactctatgattcctgacaattcatattttgaaaatgcgtcacgctccatctctgcaccaaacgttggc aattcaactctgaacccttctctgatgtcaagcgacaatgctcaaagttgtggaggccgacgaagattcagaaccaactt caccgaacttcaatccaccttccttgaagattcattcaaagaatcacactacccggatcacaaggccaaaaagtatatgg ctgactttttgaaaattccagaggatcgtatcacggtatggtttcaaaaccgacgcgcaaaatggagaaggaaggagcac cgtcaacgggatcgcactcggaatgaatctttcagtggaggatcaaactcgtttgattttgcgtgtttttctgcgcaaca tccagatgatggtccgaatgcaaagcatccaaattcttttggtattcccaatcaaccgatgtcccttgaccaattcccaa tgaacactgaacaagattttcctgaatttccaagcctacaggagcatcaataa

ggcatcgatatactatctcaatatcatttatttggatttttt aagttgaaattttggttgttttttcttcctcttagaacaaatcaaaaagccagtttgtacctgttatacagatcaagaaa tatgtattttgcaattttctatgttattttttgacttttcatctatatatttttcgtttgtatatgtgattatgtgctta ttctagattttcatatcactttttaaccgttagttttgtcagataattagataatattaataaataaaaccattc



Name of probe set: dsc-1

Probes designed on Mon, 01 Mar 10 14:13:32 -0700

48 probes designed for target of length 1210

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

aggttggtatgagggttcat, dsc-1_1, 1, 1, 45

caggaaagtcgaatacgttg, dsc-1_2, 2, 24, 45

tttggaagtagcatcgggag, dsc-1_3, 3, 46, 50

ggttacagacaaagcttctg, dsc-1_4, 4, 68, 45

actggtggcacagaaaaatc, dsc-1_5, 5, 91, 45

gaattgttgagctccctgtt, dsc-1_6, 6, 113, 45

aagctgtggtcccagattgc, dsc-1_7, 7, 143, 55

ttcgtcggcatgctgtgaat, dsc-1_8, 8, 185, 50

aggttatggtagtaggaggc, dsc-1_9, 9, 211, 50

agtggttatgaagggcgacg, dsc-1_10, 10, 234, 55

taatgctgattcgacatttg, dsc-1_11, 11, 256, 35

gttggacaatcaaaatccga, dsc-1_12, 12, 280, 40

agatgaaatcggtgaaaccg, dsc-1_13, 13, 302, 45

gcaattgcccagtttcatgt, dsc-1_14, 14, 324, 45

tgatcatacggactcaattg, dsc-1_15, 15, 346, 40

atgcggatcctgatttccaa, dsc-1_16, 16, 368, 45

tttccataagcatggggaga, dsc-1_17, 17, 394, 45

tgaattgtcaggaatcatag, dsc-1_18, 18, 416, 35

agcgtgacgcattttcaaaa, dsc-1_19, 19, 438, 40

ccaacgtttggtgcagagat, dsc-1_20, 20, 460, 50

gagaagggttcagagttgaa, dsc-1_21, 21, 483, 45

tgagcattgtcgcttgacat, dsc-1_22, 22, 505, 45

atcttcgtcggcctccacaa, dsc-1_23, 23, 528, 55

agttcggtgaagttggttct, dsc-1_24, 24, 550, 45

gaatcttcaaggaaggtgga, dsc-1_25, 25, 574, 45

cgggtagtgtgattctttga, dsc-1_26, 26, 596, 45

tatactttttggccttgtga, dsc-1_27, 27, 618, 35

ggaattttcaaaaagtcagc, dsc-1_28, 28, 640, 35

ccataccgtgatacgatcct, dsc-1_29, 29, 662, 50

attttgcgcgtcggttttga, dsc-1_30, 30, 684, 45

tgacggtgctccttccttct, dsc-1_31, 31, 706, 55

attcattccgagtgcgatcc, dsc-1_32, 32, 729, 50

gagtttgatcctccactgaa, dsc-1_33, 33, 751, 45

gcagaaaaacacgcaaaatc, dsc-1_34, 34, 775, 40

cggaccatcatctggatgtt, dsc-1_35, 35, 797, 50

aagaatttggatgctttgca, dsc-1_36, 36, 819, 35

atcggttgattgggaatacc, dsc-1_37, 37, 841, 45

cattgggaattggtcaaggg, dsc-1_38, 38, 863, 50

caggaaaatcttgttcagtg, dsc-1_39, 39, 885, 40

attgatgctcctgtaggctt, dsc-1_40, 40, 912, 45

tgagatagtatatcgatgcc, dsc-1_41, 41, 934, 40

gaggaagaaaaaacaaccaa, dsc-1_42, 42, 987, 35

ctggctttttgatttgttct, dsc-1_43, 43, 1009, 35

tgatctgtataacaggtaca, dsc-1_44, 44, 1031, 35

catagaaaattgcaaaatac, dsc-1_45, 45, 1059, 25

cacatatacaaacgaaaaat, dsc-1_46, 46, 1104, 25

gaaaatctagaataagcaca, dsc-1_47, 47, 1128, 30

ctgacaaaactaacggttaa, dsc-1_48, 48, 1158, 35

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