Van Oudenaarden Lab:C37E2.5

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

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>C37E2.5 (ceh-37 spliced coding region + 3'-UTR)

atgaccagctatagttacttcacaattccttcaactgccacaaccgggttcaattatccggttcaaccaatgactatgtt tagtggagcaccatacaatgcagcaatgatcccacggaagaatcgtcgcgaacgaaccacttacagccgtcagcagttgg aaattttagagacattgtttaacgaaactcagtatcctgatgtatttgctcgcgagagagtcgccgaccagattcgtctt caagaaagtcgaattcaggtgtggttcaaaaaccgacgtgcaaagtaccgcctccaagagaaacaaaaaccaaaaagaag caacgaaaagagccaggagcacaaaagtgaagatcaacaacaaacagatgttttggatggggagcccctgaaaggaggct cgcctggttatcagccacaaatcaaaagtgaactggagagttgtgacggcgcagtggccagcggtaagctaggcacgccg aagagcatttctccagtggagacgaccgcaagcaccactagctccaatacatctgctgcagagctgcaatggaacggtga tcacaaaattttgggattcggaaaaaatgagacaactacttctgccgctgtaagtccgacagccgacaatgcatcaacac catcctcttcaagctcaatcaccgctacaagctcattgccaacaacgtcatcttctttatctgtctataactatccggca atctatccacaatggggacttgactacagtacctacgccaatccgcaatacgctcaattctcgcacaatccttacgcagg caccccgttctggtattcaaatggaaataatttgtaa

atttgaagtgtctaggtactacttaaa ctaaaacctatttgtattcttatttagcattcattcgtttttgaagaaatgtgcattccatcatcccatcatccttgaaa cattgtaataaattgtcattttcatgttcctttcctgtaaatttaattctgttttgtttttgagtttactaaactgaact accagctcaactccatgcttggtttaataaccaatttctttaattttaatgtctcttcacaaatcaagtttttcctcaga acttgatgtttttgcattcccataactcccgttcacttttcattatttcctgattcagtcactattctattcagtgtttg atacaataaatcacattatttacacacatcta

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Name of probe set: ceh-37

Probes designed on Mon, 01 Mar 10 13:07:54 -0700

48 probes designed for target of length 1216

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

gaagtaactatagctggtca, ceh-37_1, 1, 2, 40

ttgtggcagttgaaggaatt, ceh-37_2, 2, 24, 40

tgaaccggataattgaaccc, ceh-37_3, 3, 46, 45

gtgctccactaaacatagtc, ceh-37_4, 4, 72, 45

gggatcattgctgcattgta, ceh-37_5, 5, 94, 45

ttcgttcgcgacgattcttc, ceh-37_6, 6, 117, 50

aaatttccaactgctgacgg, ceh-37_7, 7, 147, 45

caggatactgagtttcgtta, ceh-37_8, 8, 180, 40

actctctcgcgagcaaatac, ceh-37_9, 9, 202, 50

ttgaagacgaatctggtcgg, ceh-37_10, 10, 224, 50

accacacctgaattcgactt, ceh-37_11, 11, 246, 45

gtactttgcacgtcggtttt, ceh-37_12, 12, 269, 45

gtttttgtttctcttggagg, ceh-37_13, 13, 291, 40

gctcttttcgttgcttcttt, ceh-37_14, 14, 314, 40

gatcttcacttttgtgctcc, ceh-37_15, 15, 336, 45

ccccatccaaaacatctgtt, ceh-37_16, 16, 363, 45

taaccaggcgagcctccttt, ceh-37_17, 17, 391, 55

gttcacttttgatttgtggc, ceh-37_18, 18, 414, 40

actgcgccgtcacaactctc, ceh-37_19, 19, 436, 60

tcttcggcgtgcctagctta, ceh-37_20, 20, 465, 55

gtcgtctccactggagaaat, ceh-37_21, 21, 487, 50

attggagctagtggtgcttg, ceh-37_22, 22, 509, 50

attgcagctctgcagcagat, ceh-37_23, 23, 531, 50

ccaaaattttgtgatcaccg, ceh-37_24, 24, 555, 40

ggcagaagtagttgtctcat, ceh-37_25, 25, 587, 45

attgtcggctgtcggactta, ceh-37_26, 26, 611, 50

cttgaagaggatggtgttga, ceh-37_27, 27, 634, 45

tgagcttgtagcggtgattg, ceh-37_28, 28, 656, 50

aagaagatgacgttgttggc, ceh-37_29, 29, 678, 45

gccggatagttatagacaga, ceh-37_30, 30, 700, 45

aagtccccattgtggataga, ceh-37_31, 31, 722, 45

gattggcgtaggtactgtag, ceh-37_32, 32, 744, 50

tgcgagaattgagcgtattg, ceh-37_33, 33, 766, 45

tttgaataccagaacggggt, ceh-37_34, 34, 802, 45

gtagtacctagacacttcaa, ceh-37_35, 35, 840, 40

cgaatgaatgctaaataaga, ceh-37_36, 36, 882, 30

gatggaatgcacatttcttc, ceh-37_37, 37, 907, 40

aatgtttcaaggatgatggg, ceh-37_38, 38, 929, 40

gaaaggaacatgaaaatgac, ceh-37_39, 39, 959, 35

ctcaaaaacaaaacagaatt, ceh-37_40, 40, 989, 25

gagctggtagttcagtttag, ceh-37_41, 41, 1013, 45

ggttattaaaccaagcatgg, ceh-37_42, 42, 1037, 40

cttgatttgtgaagagacat, ceh-37_43, 43, 1073, 35

aacatcaagttctgaggaaa, ceh-37_44, 44, 1095, 35

tgaacgggagttatgggaat, ceh-37_45, 45, 1120, 45

gactgaatcaggaaataatg, ceh-37_46, 46, 1145, 35

gtatcaaacactgaatagaa, ceh-37_47, 47, 1169, 30

gtgtgtaaataatgtgattt, ceh-37_48, 48, 1192, 25