Van Oudenaarden Lab:F20D12.6

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

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>F20D12.6b (ceh-19 spliced coding region)

ctcattctcaatctaattcctaatcgtcatatatattggcaacttctcaactctacattttcttaaagtcttttaaataa aaactattgaaaa

atggctttcaatattgaaagtttactggagaaaaaatctaatccagttgaagaaggtaatgattttgaggaagaaaacga cagcgaaaaaaacggtgaagaagacgaagaggaagaagaaaaaaatgtaattgatggttggacaaatatggcaacaagcc aattggcaatgtttgctattgcaaatgatctgagaacaccaactcttgttgagttacaaatgcttttaggagtatcagct cgaaagcatgattacaagagaagcagaaaatctgtctgcgaaagaaaaccacgacaagcgtattcagcaagacagttgga tagattggaaacggaatttcaaactgacaaatatctgagtgtgaacaagagaatccaattgtctcagacattgaatctaa ctgagacccagataaaaacatggtttcaaaatagacgaacaaaatggaagaaacaattaacatcatcaatacgtcaaatg gtaaaagatgctccaacatccacgtcagttggtgttccttttcagtcacttctcactccgcccactccacctacaactct tgcctgtcacgtcaactccctgttcgcttgtgagcaatag

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Name of probe set: ceh-19

Probes designed on Mon, 01 Mar 10 08:20:56 -0700

31 probes designed for target of length 693 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

ggaattagattgagaatgag, ceh-19_1, 1, 1, 35

gttgccaatatatatgacga, ceh-19_2, 2, 24, 35

taagaaaatgtagagttgag, ceh-19_3, 3, 46, 30

atagtttttatttaaaagac, ceh-19_4, 4, 68, 15

caatattgaaagccattttt, ceh-19_5, 5, 90, 25

gattttttctccagtaaact, ceh-19_6, 6, 112, 30

cattaccttcttcaactgga, ceh-19_7, 7, 135, 40

gctgtcgttttcttcctcaa, ceh-19_8, 8, 158, 45

cgtcttcttcaccgtttttt, ceh-19_9, 9, 180, 40

acatttttttcttcttcctc, ceh-19_10, 10, 202, 30

catatttgtccaaccatcaa, ceh-19_11, 11, 224, 35

acattgccaattggcttgtt, ceh-19_12, 12, 246, 40

ctcagatcatttgcaatagc, ceh-19_13, 13, 268, 40

taactcaacaagagttggtg, ceh-19_14, 14, 290, 40

ctgatactcctaaaagcatt, ceh-19_15, 15, 312, 35

ctcttgtaatcatgctttcg, ceh-19_16, 16, 334, 40

ttcgcagacagattttctgc, ceh-19_17, 17, 356, 45

gaatacgcttgtcgtggttt, ceh-19_18, 18, 379, 45

caatctatccaactgtcttg, ceh-19_19, 19, 401, 40

tgtcagtttgaaattccgtt, ceh-19_20, 20, 423, 35

ctcttgttcacactcagata, ceh-19_21, 21, 445, 40

caatgtctgagacaattgga, ceh-19_22, 22, 467, 40

ttatctgggtctcagttaga, ceh-19_23, 23, 489, 40

cgtctattttgaaaccatgt, ceh-19_24, 24, 511, 35

taattgtttcttccattttg, ceh-19_25, 25, 533, 25

ccatttgacgtattgatgat, ceh-19_26, 26, 555, 35

gtggatgttggagcatcttt, ceh-19_27, 27, 577, 45

ctgaaaaggaacaccaactg, ceh-19_28, 28, 599, 45

gagtgggcggagtgagaagt, ceh-19_29, 29, 621, 60

tgacaggcaagagttgtagg, ceh-19_30, 30, 643, 50

acaagcgaacagggagttga, ceh-19_31, 31, 665, 50