Van Oudenaarden Lab:F48D6.3

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(New page: '''Progress:''' Probes designed: (03-01-2010 - Alexander van Oudenaarden) Probes coupled: Probes purified: Probes tested: Dyes available: ----)
Current revision (17:33, 1 March 2010) (view source)
 
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>F48D6.3 (hlh-13 spliced coding region)
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atgacagcttcatcttctgggtgtggcggtttaccagtttcccagtgtccctcttattcctcactttcaaagctcttctt
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tatggattcatcgtatgattcatattactgcgaggagcccgaggagcgacaaactgcttcaattcgtgagaggaagagaa
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tgtgtagtattaatgtggcatttattgagctccgcaattatattccaacatttccttatgaaaaacggctctctaaaatt
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gataccttgaacctggcaattgcatatatcaatatgttggatgacgttctgagaacacccgaagattctggtcagtatat
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tcaaaagtgtgttcatatggctcgcacaggtcaaatcggtgcaccagcgtggagtacaagtgatttgctagcccggctca
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attggatcaagtggcgtcgtcttggaatcgagccgattgcctaa
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acaaactctgtgtatgcgtaaacggcagaa
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agcaaaataccttttaattgtattttccacgaatacaactcatgattttctatctttcatttcaataaacatactgatta
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----
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Name of probe set: hlh-13
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Probes designed on Mon, 01 Mar 10 14:32:46 -0700
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25 probes designed for target of length 554 (target too short for 48 probes)
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Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
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ccagaagatgaagctgtcat, hlh-13_1, 1, 1, 45
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ggaaactggtaaaccgccac, hlh-13_2, 2, 23, 55
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agtgaggaataagagggaca, hlh-13_3, 3, 46, 45
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atccataaagaagagctttg, hlh-13_4, 4, 68, 35
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gcagtaatatgaatcatacg, hlh-13_5, 5, 92, 35
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tttgtcgctcctcgggctcc, hlh-13_6, 6, 114, 65
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ttcctctcacgaattgaagc, hlh-13_7, 7, 136, 45
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cacattaatactacacattc, hlh-13_8, 8, 158, 30
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aattgcggagctcaataaat, hlh-13_9, 9, 180, 35
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tcataaggaaatgttggaat, hlh-13_10, 10, 202, 30
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atcaattttagagagccgtt, hlh-13_11, 11, 224, 35
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atgcaattgccaggttcaag, hlh-13_12, 12, 246, 45
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acgtcatccaacatattgat, hlh-13_13, 13, 268, 35
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agaatcttcgggtgttctca, hlh-13_14, 14, 290, 45
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cacacttttgaatatactga, hlh-13_15, 15, 312, 30
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tgacctgtgcgagccatatg, hlh-13_16, 16, 334, 55
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actccacgctggtgcaccga, hlh-13_17, 17, 356, 65
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gccgggctagcaaatcactt, hlh-13_18, 18, 378, 55
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cgacgccacttgatccaatt, hlh-13_19, 19, 400, 50
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ggcaatcggctcgattccaa, hlh-13_20, 20, 422, 55
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acgcatacacagagtttgtt, hlh-13_21, 21, 444, 40
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ggtattttgctttctgccgt, hlh-13_22, 22, 466, 45
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ttcgtggaaaatacaattaa, hlh-13_23, 23, 488, 25
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agatagaaaatcatgagttg, hlh-13_24, 24, 510, 30
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tcagtatgtttattgaaatg, hlh-13_25, 25, 532, 25

Current revision

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:


>F48D6.3 (hlh-13 spliced coding region)

atgacagcttcatcttctgggtgtggcggtttaccagtttcccagtgtccctcttattcctcactttcaaagctcttctt tatggattcatcgtatgattcatattactgcgaggagcccgaggagcgacaaactgcttcaattcgtgagaggaagagaa tgtgtagtattaatgtggcatttattgagctccgcaattatattccaacatttccttatgaaaaacggctctctaaaatt gataccttgaacctggcaattgcatatatcaatatgttggatgacgttctgagaacacccgaagattctggtcagtatat tcaaaagtgtgttcatatggctcgcacaggtcaaatcggtgcaccagcgtggagtacaagtgatttgctagcccggctca attggatcaagtggcgtcgtcttggaatcgagccgattgcctaa

acaaactctgtgtatgcgtaaacggcagaa agcaaaataccttttaattgtattttccacgaatacaactcatgattttctatctttcatttcaataaacatactgatta


Name of probe set: hlh-13

Probes designed on Mon, 01 Mar 10 14:32:46 -0700

25 probes designed for target of length 554 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

ccagaagatgaagctgtcat, hlh-13_1, 1, 1, 45

ggaaactggtaaaccgccac, hlh-13_2, 2, 23, 55

agtgaggaataagagggaca, hlh-13_3, 3, 46, 45

atccataaagaagagctttg, hlh-13_4, 4, 68, 35

gcagtaatatgaatcatacg, hlh-13_5, 5, 92, 35

tttgtcgctcctcgggctcc, hlh-13_6, 6, 114, 65

ttcctctcacgaattgaagc, hlh-13_7, 7, 136, 45

cacattaatactacacattc, hlh-13_8, 8, 158, 30

aattgcggagctcaataaat, hlh-13_9, 9, 180, 35

tcataaggaaatgttggaat, hlh-13_10, 10, 202, 30

atcaattttagagagccgtt, hlh-13_11, 11, 224, 35

atgcaattgccaggttcaag, hlh-13_12, 12, 246, 45

acgtcatccaacatattgat, hlh-13_13, 13, 268, 35

agaatcttcgggtgttctca, hlh-13_14, 14, 290, 45

cacacttttgaatatactga, hlh-13_15, 15, 312, 30

tgacctgtgcgagccatatg, hlh-13_16, 16, 334, 55

actccacgctggtgcaccga, hlh-13_17, 17, 356, 65

gccgggctagcaaatcactt, hlh-13_18, 18, 378, 55

cgacgccacttgatccaatt, hlh-13_19, 19, 400, 50

ggcaatcggctcgattccaa, hlh-13_20, 20, 422, 55

acgcatacacagagtttgtt, hlh-13_21, 21, 444, 40

ggtattttgctttctgccgt, hlh-13_22, 22, 466, 45

ttcgtggaaaatacaattaa, hlh-13_23, 23, 488, 25

agatagaaaatcatgagttg, hlh-13_24, 24, 510, 30

tcagtatgtttattgaaatg, hlh-13_25, 25, 532, 25

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