Van Oudenaarden Lab:F58A4.7

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(New page: '''Progress:''' Probes designed: (03-01-2010 - Alexander van Oudenaarden) Probes coupled: Probes purified: Probes tested: Dyes available: ----)
Current revision (17:30, 1 March 2010) (view source)
 
Line 12: Line 12:
----
----
 +
 +
>F58A4.7a.1 (hlh-11 spliced coding region)
 +
 +
atggttcgttcggatagcgcagaagaagatcaaatcatcattgatgatggatttgatctaactgaagaggacgaggagat
 +
gatgagttcgggtacaggtgcattgcccgtgactatcgccgactggaattccgtgacaaatgcacgaatggcaccaccat
 +
ccatcatgtcagctgcttcggcatttgatttgacggcttctggaatgcagaattcgttgcgttctgtcttgcctacctcg
 +
acgattgggcatgcaccaatgctcgccaaccggtcactatcccaaccggcgccactttcaccaacgtcgctcgaccccga
 +
cagaagaatgcgtcggcaaattgccaattgcaacgagcggcggcggatgcagagcatcaatgcgggattcttggctctaa
 +
gagccttacttcccagaaaagagggagaaaagctgtcgaaggcggctattctgcagcaaactgcggatatggttcatcaa
 +
cttttgggacacaaaggagaagatatacctgacggtggagaacccaaaaaactcaaacttgaagaagatcaccacgacgc
 +
tgaccatcaagcgcaaatagcacatctccaaacaatattagaaactgaacgagccgcccgtaaggctttggagagtcaag
 +
taattcagctccgtgagctgctccaaatgacgacaacatcatcgcaagcatcgtcaccagtgacaccaagatctaatggt
 +
tctggtggtttcacattgccatcttcatatgcttcatcggctcttcctactccgttacgagaatcaccggaaaggaaacc
 +
atcatttcaagatacaacaagtactccgttgtctcttttgacactgaacggtagtccaacttcttctgaatcattggcgt
 +
ctcaacgtatattccatccgcctccaacattgccaagtttagagacaactgttatccgtcctacaccactaccaccaata
 +
tcagttgaaatatcatcaccatctctgtcaactccatcacctttgactgccgctccaataatcttctcaacagcagttcc
 +
aactcaatcgagtattttgttccaaacagcggcggcagcggtcacctcggccatgtctaccggtaactcgacacccgtcg
 +
cattgccacatcatctgcagggacataattctgcgtttgtaagcacacaaccgagcctgaccctgtctcaatcaatgcaa
 +
acaattgttgaagctattcgtcatttggagggaagtcatttcattccaacatctcctccaccaacctcacagacatcgct
 +
cgtccgttga
 +
 +
----
 +
 +
Name of probe set: hlh-11
 +
 +
Probes designed on Mon, 01 Mar 10 14:29:46 -0700
 +
 +
48 probes designed for target of length 1290
 +
 +
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
 +
 +
tgatcttcttctgcgctatc, hlh-11_1, 1, 13, 45
 +
 +
cgtcctcttcagttagatca, hlh-11_2, 2, 54, 45
 +
 +
tgtacccgaactcatcatct, hlh-11_3, 3, 77, 45
 +
 +
attccagtcggcgatagtca, hlh-11_4, 4, 110, 50
 +
 +
ccattcgtgcatttgtcacg, hlh-11_5, 5, 132, 50
 +
 +
agctgacatgatggatggtg, hlh-11_6, 6, 155, 50
 +
 +
ccgtcaaatcaaatgccgaa, hlh-11_7, 7, 177, 45
 +
 +
caacgaattctgcattccag, hlh-11_8, 8, 200, 45
 +
 +
tcgaggtaggcaagacagaa, hlh-11_9, 9, 222, 50
 +
 +
agcattggtgcatgcccaat, hlh-11_10, 10, 244, 50
 +
 +
ttgggatagtgaccggttgg, hlh-11_11, 11, 266, 55
 +
 +
atttgccgacgcattcttct, hlh-11_12, 12, 322, 45
 +
 +
aagaatcccgcattgatgct, hlh-11_13, 13, 373, 45
 +
 +
tgggaagtaaggctcttaga, hlh-11_14, 14, 396, 45
 +
 +
gacagcttttctccctcttt, hlh-11_15, 15, 418, 45
 +
 +
agtttgctgcagaatagccg, hlh-11_16, 16, 443, 50
 +
 +
gtcccaaaagttgatgaacc, hlh-11_17, 17, 471, 45
 +
 +
cgtcaggtatatcttctcct, hlh-11_18, 18, 495, 45
 +
 +
ttgagttttttgggttctcc, hlh-11_19, 19, 517, 40
 +
 +
gtcgtggtgatcttcttcaa, hlh-11_20, 20, 539, 45
 +
 +
ctatttgcgcttgatggtca, hlh-11_21, 21, 561, 45
 +
 +
cggctcgttcagtttctaat, hlh-11_22, 22, 597, 45
 +
 +
tgactctccaaagccttacg, hlh-11_23, 23, 619, 50
 +
 +
cagctcacggagctgaatta, hlh-11_24, 24, 641, 50
 +
 +
gcgatgatgttgtcgtcatt, hlh-11_25, 25, 666, 45
 +
 +
tagatcttggtgtcactggt, hlh-11_26, 26, 696, 45
 +
 +
aatgtgaaaccaccagaacc, hlh-11_27, 27, 718, 45
 +
 +
gccgatgaagcatatgaaga, hlh-11_28, 28, 742, 45
 +
 +
ttctcgtaacggagtaggaa, hlh-11_29, 29, 764, 45
 +
 +
atgatggtttcctttccggt, hlh-11_30, 30, 786, 45
 +
 +
ggagtacttgttgtatcttg, hlh-11_31, 31, 808, 40
 +
 +
cgttcagtgtcaaaagagac, hlh-11_32, 32, 831, 45
 +
 +
gattcagaagaagttggact, hlh-11_33, 33, 853, 40
 +
 +
gaatatacgttgagacgcca, hlh-11_34, 34, 875, 45
 +
 +
aaacttggcaatgttggagg, hlh-11_35, 35, 901, 45
 +
 +
aggacggataacagttgtct, hlh-11_36, 36, 923, 45
 +
 +
ctgatattggtggtagtggt, hlh-11_37, 37, 945, 45
 +
 +
gttgacagagatggtgatga, hlh-11_38, 38, 973, 45
 +
 +
ttattggagcggcagtcaaa, hlh-11_39, 39, 1002, 45
 +
 +
gttggaactgctgttgagaa, hlh-11_40, 40, 1024, 45
 +
 +
gccgctgtttggaacaaaat, hlh-11_41, 41, 1054, 45
 +
 +
tcgagttaccggtagacatg, hlh-11_42, 42, 1092, 50
 +
 +
tatgtccctgcagatgatgt, hlh-11_43, 43, 1128, 45
 +
 +
tgtgtgcttacaaacgcaga, hlh-11_44, 44, 1150, 45
 +
 +
attgattgagacagggtcag, hlh-11_45, 45, 1177, 45
 +
 +
ccaaatgacgaatagcttca, hlh-11_46, 46, 1209, 40
 +
 +
gttggaatgaaatgacttcc, hlh-11_47, 47, 1231, 40
 +
 +
atgtctgtgaggttggtgga, hlh-11_48, 48, 1257, 50

Current revision

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:


>F58A4.7a.1 (hlh-11 spliced coding region)

atggttcgttcggatagcgcagaagaagatcaaatcatcattgatgatggatttgatctaactgaagaggacgaggagat gatgagttcgggtacaggtgcattgcccgtgactatcgccgactggaattccgtgacaaatgcacgaatggcaccaccat ccatcatgtcagctgcttcggcatttgatttgacggcttctggaatgcagaattcgttgcgttctgtcttgcctacctcg acgattgggcatgcaccaatgctcgccaaccggtcactatcccaaccggcgccactttcaccaacgtcgctcgaccccga cagaagaatgcgtcggcaaattgccaattgcaacgagcggcggcggatgcagagcatcaatgcgggattcttggctctaa gagccttacttcccagaaaagagggagaaaagctgtcgaaggcggctattctgcagcaaactgcggatatggttcatcaa cttttgggacacaaaggagaagatatacctgacggtggagaacccaaaaaactcaaacttgaagaagatcaccacgacgc tgaccatcaagcgcaaatagcacatctccaaacaatattagaaactgaacgagccgcccgtaaggctttggagagtcaag taattcagctccgtgagctgctccaaatgacgacaacatcatcgcaagcatcgtcaccagtgacaccaagatctaatggt tctggtggtttcacattgccatcttcatatgcttcatcggctcttcctactccgttacgagaatcaccggaaaggaaacc atcatttcaagatacaacaagtactccgttgtctcttttgacactgaacggtagtccaacttcttctgaatcattggcgt ctcaacgtatattccatccgcctccaacattgccaagtttagagacaactgttatccgtcctacaccactaccaccaata tcagttgaaatatcatcaccatctctgtcaactccatcacctttgactgccgctccaataatcttctcaacagcagttcc aactcaatcgagtattttgttccaaacagcggcggcagcggtcacctcggccatgtctaccggtaactcgacacccgtcg cattgccacatcatctgcagggacataattctgcgtttgtaagcacacaaccgagcctgaccctgtctcaatcaatgcaa acaattgttgaagctattcgtcatttggagggaagtcatttcattccaacatctcctccaccaacctcacagacatcgct cgtccgttga


Name of probe set: hlh-11

Probes designed on Mon, 01 Mar 10 14:29:46 -0700

48 probes designed for target of length 1290

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

tgatcttcttctgcgctatc, hlh-11_1, 1, 13, 45

cgtcctcttcagttagatca, hlh-11_2, 2, 54, 45

tgtacccgaactcatcatct, hlh-11_3, 3, 77, 45

attccagtcggcgatagtca, hlh-11_4, 4, 110, 50

ccattcgtgcatttgtcacg, hlh-11_5, 5, 132, 50

agctgacatgatggatggtg, hlh-11_6, 6, 155, 50

ccgtcaaatcaaatgccgaa, hlh-11_7, 7, 177, 45

caacgaattctgcattccag, hlh-11_8, 8, 200, 45

tcgaggtaggcaagacagaa, hlh-11_9, 9, 222, 50

agcattggtgcatgcccaat, hlh-11_10, 10, 244, 50

ttgggatagtgaccggttgg, hlh-11_11, 11, 266, 55

atttgccgacgcattcttct, hlh-11_12, 12, 322, 45

aagaatcccgcattgatgct, hlh-11_13, 13, 373, 45

tgggaagtaaggctcttaga, hlh-11_14, 14, 396, 45

gacagcttttctccctcttt, hlh-11_15, 15, 418, 45

agtttgctgcagaatagccg, hlh-11_16, 16, 443, 50

gtcccaaaagttgatgaacc, hlh-11_17, 17, 471, 45

cgtcaggtatatcttctcct, hlh-11_18, 18, 495, 45

ttgagttttttgggttctcc, hlh-11_19, 19, 517, 40

gtcgtggtgatcttcttcaa, hlh-11_20, 20, 539, 45

ctatttgcgcttgatggtca, hlh-11_21, 21, 561, 45

cggctcgttcagtttctaat, hlh-11_22, 22, 597, 45

tgactctccaaagccttacg, hlh-11_23, 23, 619, 50

cagctcacggagctgaatta, hlh-11_24, 24, 641, 50

gcgatgatgttgtcgtcatt, hlh-11_25, 25, 666, 45

tagatcttggtgtcactggt, hlh-11_26, 26, 696, 45

aatgtgaaaccaccagaacc, hlh-11_27, 27, 718, 45

gccgatgaagcatatgaaga, hlh-11_28, 28, 742, 45

ttctcgtaacggagtaggaa, hlh-11_29, 29, 764, 45

atgatggtttcctttccggt, hlh-11_30, 30, 786, 45

ggagtacttgttgtatcttg, hlh-11_31, 31, 808, 40

cgttcagtgtcaaaagagac, hlh-11_32, 32, 831, 45

gattcagaagaagttggact, hlh-11_33, 33, 853, 40

gaatatacgttgagacgcca, hlh-11_34, 34, 875, 45

aaacttggcaatgttggagg, hlh-11_35, 35, 901, 45

aggacggataacagttgtct, hlh-11_36, 36, 923, 45

ctgatattggtggtagtggt, hlh-11_37, 37, 945, 45

gttgacagagatggtgatga, hlh-11_38, 38, 973, 45

ttattggagcggcagtcaaa, hlh-11_39, 39, 1002, 45

gttggaactgctgttgagaa, hlh-11_40, 40, 1024, 45

gccgctgtttggaacaaaat, hlh-11_41, 41, 1054, 45

tcgagttaccggtagacatg, hlh-11_42, 42, 1092, 50

tatgtccctgcagatgatgt, hlh-11_43, 43, 1128, 45

tgtgtgcttacaaacgcaga, hlh-11_44, 44, 1150, 45

attgattgagacagggtcag, hlh-11_45, 45, 1177, 45

ccaaatgacgaatagcttca, hlh-11_46, 46, 1209, 40

gttggaatgaaatgacttcc, hlh-11_47, 47, 1231, 40

atgtctgtgaggttggtgga, hlh-11_48, 48, 1257, 50

Personal tools