Van Oudenaarden Lab:ImProToo: Difference between revisions
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
You dont have to reinvent the wheel. This page contains a list of functions commonly used in analyzing microscope data. The programs here are in a state of flux and may not even be working versions. However, the essential algorithm can be adapted to fit your needs. If you add to the capability of existing functions then please upload your versions so that all may profit by your cleverness! | You dont have to reinvent the wheel. This page contains a list of functions commonly used in analyzing microscope data. The programs here are in a state of flux and may not even be working versions. However, the essential algorithm can be adapted to fit your needs. If you add to the capability of existing functions then please upload your versions so that all may profit by your cleverness! | ||
Technical | '''Technical Keyword''s: Nuclei segmentation, Spot Counting, Worm Geometry, Z-Stack cleaning, Background correction | ||
Method Keywords: FISH (by Def. RNA), GFP, Antibody, DNA FISH, Time-Lapse, Confocal, Epi, Trans | Method Keywords: FISH (by Def. RNA), GFP, Antibody, DNA FISH, Time-Lapse, Confocal, Epi, Trans | ||
| Line 9: | Line 9: | ||
==== C. elegans L.x==== | ==== C. elegans L.x==== | ||
* [[Media:Tiffread2.m]] Reading Stack files | * [[Media:Tiffread2.m|tiffread2.m]] Reading Stack files | ||
*Background Corrections | *Background Corrections | ||
*Worm Straightening | *Worm Straightening | ||
Revision as of 13:42, 10 April 2009
Image Processing Tools - Repository for the AvO lab
Image Processing Tools - Repository for the AvO lab
You dont have to reinvent the wheel. This page contains a list of functions commonly used in analyzing microscope data. The programs here are in a state of flux and may not even be working versions. However, the essential algorithm can be adapted to fit your needs. If you add to the capability of existing functions then please upload your versions so that all may profit by your cleverness!
'Technical Keywords: Nuclei segmentation, Spot Counting, Worm Geometry, Z-Stack cleaning, Background correction Method Keywords: FISH (by Def. RNA), GFP, Antibody, DNA FISH, Time-Lapse, Confocal, Epi, Trans
C elegans
C. elegans L.x
- tiffread2.m Reading Stack files
- Background Corrections
- Worm Straightening
- Worm Stitching
- Spot Counting
- Annotating Nucleii
C. elegans Embryos
- for instance, this
- or this
- or even this
Yeast
you can add text like this.you can add text like this.
Mammalian Cells
you can add text like this.you can add text like this.
Cyano-Bacteria
you can add text like this.you can add text like this.
Upload documents
you can upload a file from the "Upload file" link to the left
you can link that file to your page with something like this :
you can do the same thing and name it something fancy like this :
