Van Oudenaarden Lab:Internal: Difference between revisions
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<br />[[Van_Oudenaarden_Lab:ImProToo | '''Image Processing Tools''' ]] | |||
<br /> Reagents list<br />[[Van_Oudenaarden_Lab:Enzymes | Restriction enzymes]] (-20C fridge)<br /> Chores list<br/> | <br /> Reagents list<br />[[Van_Oudenaarden_Lab:Enzymes | Restriction enzymes]] (-20C fridge)<br /> Chores list<br/> | ||
[[Van_Oudenaarden_Lab:Books | Books in the lab | [[Van_Oudenaarden_Lab:Books | Books in the lab]]<br/>[http://singlemoleculefish.com/] Single Molecule FISH | ||
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<span style="font-style: italic;"><big><span style="font-weight: bold;"></span></big>Online tools:</span><br /><div style="margin-left: 40px;">[http://tools.neb.com/NEBcutter2/index.php <span style="font-weight: bold;"><big><span style="font-weight: bold;"></span></big></span>]<span style="font-family: times new roman,times,serif;">[http://tools.neb.com/NEBcutter2/index.php NebCutter V2.0] Restriction and other DNA analysis, with great GUI. | <span style="font-style: italic;"><big><span style="font-weight: bold;"></span></big>Online tools:</span><br /><div style="margin-left: 40px;">[http://tools.neb.com/NEBcutter2/index.php <span style="font-weight: bold;"><big><span style="font-weight: bold;"></span></big></span>]<span style="font-family: times new roman,times,serif;">[http://tools.neb.com/NEBcutter2/index.php NebCutter V2.0] Restriction and other DNA analysis, with great GUI. | ||
Revision as of 14:47, 10 April 2009
Image Processing Tools
Reagents list
Restriction enzymes (-20C fridge)
Chores list
Books in the lab
[1] Single Molecule FISH
Online tools:
NebCutter V2.0 Restriction and other DNA analysis, with great GUI.
Primer3 Primer design tool best for creating compatible primer pairs for a given template.
Netprimer Primer test tool. Verify melting temperatures, hairpins, dimerization, &c of final primer designs.
NCBI National Center for Biotechnology Information
Freeware:Primer3 Primer design tool best for creating compatible primer pairs for a given template.
Netprimer Primer test tool. Verify melting temperatures, hairpins, dimerization, &c of final primer designs.
NCBI National Center for Biotechnology Information
WinGene Tool for analyzing nucleotide sequences. Best for reverse complements and primer checks.
MFI For converting flow cytometer output files to ASCII. Simple free registration.
OpenOffice.org Open source office environment, fully compatible (well, almost) with MS Office, including Powerpoint.
Open Perl IDE Open source Integrated Development environment for Perl. Easy to set up and use.
ActivePerl Easy installation for running Perl scripts in Windows; necessary for Open Perl IDE.
Perl scripts:MFI For converting flow cytometer output files to ASCII. Simple free registration.
OpenOffice.org Open source office environment, fully compatible (well, almost) with MS Office, including Powerpoint.
Open Perl IDE Open source Integrated Development environment for Perl. Easy to set up and use.
ActivePerl Easy installation for running Perl scripts in Windows; necessary for Open Perl IDE.
deannotate_dna.pl A useful script for annotating and editing DNA sequences. This file provides documentation and an example.
cytometry.zip Package of scripts and executables for quickly processing raw flow cytometer files into a table of histograms. Consult Michael on its use.
cytometry.zip Package of scripts and executables for quickly processing raw flow cytometer files into a table of histograms. Consult Michael on its use.
Protocols:
