Van Oudenaarden Lab:T01E8.2: Difference between revisions
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Name of probe set: ref-1 | Name of probe set: ref-1 | ||
Probes designed on Mon, 01 Mar 10 | Probes designed on Mon, 01 Mar 10 18:49:58 -0700 | ||
48 probes designed for target of length 1104 | 48 probes designed for target of length 1104 | ||
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC | Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC | ||
ggggtactgatgaggaccat, | ggggtactgatgaggaccat, ref-1_1, 1, 1, 55 | ||
tgttatgagcgtaagctggt, | tgttatgagcgtaagctggt, ref-1_2, 2, 24, 45 | ||
cgtttcttctcctgtgatgt, | cgtttcttctcctgtgatgt, ref-1_3, 3, 49, 45 | ||
ctttgcattaatctcatctc, | ctttgcattaatctcatctc, ref-1_4, 4, 71, 35 | ||
tcaatagttgaagctccttg, | tcaatagttgaagctccttg, ref-1_5, 5, 93, 40 | ||
ggtcattttctcattatccg, | ggtcattttctcattatccg, ref-1_6, 6, 125, 40 | ||
cacggtttaagacatcacct, | cacggtttaagacatcacct, ref-1_7, 7, 147, 45 | ||
atgcgactgaccacttcgac, | atgcgactgaccacttcgac, ref-1_8, 8, 169, 55 | ||
tggtccaggtgattcggttt, | tggtccaggtgattcggttt, ref-1_9, 9, 191, 50 | ||
cctttgcgatttggatttga, | cctttgcgatttggatttga, ref-1_10, 10, 214, 40 | ||
tgatcggaatccgtcaaaga, | tgatcggaatccgtcaaaga, ref-1_11, 11, 236, 45 | ||
aaggaataagtgagcgactc, | aaggaataagtgagcgactc, ref-1_12, 12, 259, 45 | ||
attgacgcccagggatttga, | attgacgcccagggatttga, ref-1_13, 13, 281, 50 | ||
caaaatcctgacagacatct, | caaaatcctgacagacatct, ref-1_14, 14, 303, 40 | ||
aaaaactgcttggcacgttg, | aaaaactgcttggcacgttg, ref-1_15, 15, 325, 45 | ||
caaagatgaacgttctcgat, | caaagatgaacgttctcgat, ref-1_16, 16, 347, 40 | ||
attttccagatacagtgctc, | attttccagatacagtgctc, ref-1_17, 17, 369, 40 | ||
tccgactcagatcttctctt, | tccgactcagatcttctctt, ref-1_18, 18, 391, 45 | ||
gctcattgaagagtggagaa, | gctcattgaagagtggagaa, ref-1_19, 19, 413, 45 | ||
gagagcttgactgggatcta, | gagagcttgactgggatcta, ref-1_20, 20, 435, 50 | ||
attccagattccgatgtcga, | attccagattccgatgtcga, ref-1_21, 21, 457, 45 | ||
cacttcctttctatcaattg, | cacttcctttctatcaattg, ref-1_22, 22, 479, 35 | ||
ctcttctatcttgctctcta, | ctcttctatcttgctctcta, ref-1_23, 23, 507, 40 | ||
atcaaaagcttctccctgac, | atcaaaagcttctccctgac, ref-1_24, 24, 530, 45 | ||
ctcaatgataaagttcttca, | ctcaatgataaagttcttca, ref-1_25, 25, 554, 30 | ||
gatgagatgtcatgagcttg, | gatgagatgtcatgagcttg, ref-1_26, 26, 576, 45 | ||
aagcgttgcattttttcgac, | aagcgttgcattttttcgac, ref-1_27, 27, 598, 40 | ||
caattatgatatccagggtg, | caattatgatatccagggtg, ref-1_28, 28, 621, 40 | ||
gtgcttcttgttttgaatgt, | gtgcttcttgttttgaatgt, ref-1_29, 29, 644, 35 | ||
ggtcgcttcgactaacaaaa, | ggtcgcttcgactaacaaaa, ref-1_30, 30, 666, 45 | ||
tgtgcatagagtgactgctc, | tgtgcatagagtgactgctc, ref-1_31, 31, 688, 50 | ||
cttctttccctctgcaattg, | cttctttccctctgcaattg, ref-1_32, 32, 710, 45 | ||
ggaaggcaatgttttttgca, | ggaaggcaatgttttttgca, ref-1_33, 33, 732, 40 | ||
tgacggtcgctcttgaaaaa, | tgacggtcgctcttgaaaaa, ref-1_34, 34, 754, 45 | ||
acttttcaaggtctgcgcat, | acttttcaaggtctgcgcat, ref-1_35, 35, 786, 45 | ||
ggctttggtgataaggagaa, | ggctttggtgataaggagaa, ref-1_36, 36, 814, 45 | ||
catggatgggaatccaaaga, | catggatgggaatccaaaga, ref-1_37, 37, 836, 45 | ||
atggtggtggaattgggatg, | atggtggtggaattgggatg, ref-1_38, 38, 858, 50 | ||
cggaatgggaagattgggaa, | cggaatgggaagattgggaa, ref-1_39, 39, 880, 50 | ||
cattgggaagaatgggaatg, | cattgggaagaatgggaatg, ref-1_40, 40, 902, 45 | ||
ttgttgccattggtgccatt, | ttgttgccattggtgccatt, ref-1_41, 41, 924, 45 | ||
ggagactgttgagattttgg, | ggagactgttgagattttgg, ref-1_42, 42, 946, 45 | ||
ggtggagaatccagtgaata, | ggtggagaatccagtgaata, ref-1_43, 43, 970, 45 | ||
cgaagaagtatcggatgatg, | cgaagaagtatcggatgatg, ref-1_44, 44, 992, 45 | ||
gtggatggtgtttcgattga, | gtggatggtgtttcgattga, ref-1_45, 45, 1015, 45 | ||
ggaattcgagttctcatttg, | ggaattcgagttctcatttg, ref-1_46, 46, 1037, 40 | ||
ctctttcttgaagctttagg, | ctctttcttgaagctttagg, ref-1_47, 47, 1060, 40 | ||
ttcccatggtctgaacagct, | ttcccatggtctgaacagct, ref-1_48, 48, 1082, 50 | ||
Latest revision as of 18:50, 1 March 2010
Progress:
Probes designed: (03-01-2010 - Jialing Li)
Probes coupled:
Probes purified:
Probes tested:
Dyes available:
>T01E8.2 (ref-1 spliced coding region)
atggtcctcatcagtaccccaccaccagcttacgctcataacagaaaaacatcacaggagaagaaacgacgagatgagat taatgcaaagatcaaggagcttcaactattgattcaaaatgaatcggataatgagaaaatgacccaaggtgatgtcttaa accgtgcagtcgaagtggtcagtcgcatggaaaccgaatcacctggaccatcatcaaatccaaatcgcaaaggattcttt gacggattccgatcaatcgagtcgctcacttattccttcatcaaatccctgggcgtcaattcagatgtctgtcaggattt tgtgcaacgtgccaagcagtttttcgatcgagaacgttcatctttgctgagcactgtatctggaaaatcaaagagaagat ctgagtcggaaattctccactcttcaatgagctatagatcccagtcaagctctccatcgacatcggaatctggaatcaca attgatagaaaggaagtgaaaaagaatagagagcaagatagaagagatcgtcagggagaagcttttgatgctttgaagaa ctttatcattgagaacaagctcatgacatctcatcaagtcgaaaaaatgcaacgcttgaacaccctggatatcataattg cctacattcaaaacaagaagcacaattttgttagtcgaagcgaccaggagcagtcactctatgcacatgcaattgcagag ggaaagaagactgcaaaaaacattgccttccaatttttcaagagcgaccgtcacctcgttgtccgatgcgcagaccttga aaagttcttcgaattctccttatcaccaaagccactctttggattcccatccatgcccatcccaattccaccaccatcat tcccaatcttcccattccggccattcccattcttcccaatgccaatggcaccaatggcaacaagtccaaaatctcaacag tctccatcatattcactggattctccaccaccatcatccgatacttcttcgtcatcaatcgaaacaccatccactccaaa tgagaactcgaattccaatcctaaagcttcaagaaagagtaagctgttcagaccatgggaataa
Name of probe set: ref-1
Probes designed on Mon, 01 Mar 10 18:49:58 -0700
48 probes designed for target of length 1104
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
ggggtactgatgaggaccat, ref-1_1, 1, 1, 55
tgttatgagcgtaagctggt, ref-1_2, 2, 24, 45
cgtttcttctcctgtgatgt, ref-1_3, 3, 49, 45
ctttgcattaatctcatctc, ref-1_4, 4, 71, 35
tcaatagttgaagctccttg, ref-1_5, 5, 93, 40
ggtcattttctcattatccg, ref-1_6, 6, 125, 40
cacggtttaagacatcacct, ref-1_7, 7, 147, 45
atgcgactgaccacttcgac, ref-1_8, 8, 169, 55
tggtccaggtgattcggttt, ref-1_9, 9, 191, 50
cctttgcgatttggatttga, ref-1_10, 10, 214, 40
tgatcggaatccgtcaaaga, ref-1_11, 11, 236, 45
aaggaataagtgagcgactc, ref-1_12, 12, 259, 45
attgacgcccagggatttga, ref-1_13, 13, 281, 50
caaaatcctgacagacatct, ref-1_14, 14, 303, 40
aaaaactgcttggcacgttg, ref-1_15, 15, 325, 45
caaagatgaacgttctcgat, ref-1_16, 16, 347, 40
attttccagatacagtgctc, ref-1_17, 17, 369, 40
tccgactcagatcttctctt, ref-1_18, 18, 391, 45
gctcattgaagagtggagaa, ref-1_19, 19, 413, 45
gagagcttgactgggatcta, ref-1_20, 20, 435, 50
attccagattccgatgtcga, ref-1_21, 21, 457, 45
cacttcctttctatcaattg, ref-1_22, 22, 479, 35
ctcttctatcttgctctcta, ref-1_23, 23, 507, 40
atcaaaagcttctccctgac, ref-1_24, 24, 530, 45
ctcaatgataaagttcttca, ref-1_25, 25, 554, 30
gatgagatgtcatgagcttg, ref-1_26, 26, 576, 45
aagcgttgcattttttcgac, ref-1_27, 27, 598, 40
caattatgatatccagggtg, ref-1_28, 28, 621, 40
gtgcttcttgttttgaatgt, ref-1_29, 29, 644, 35
ggtcgcttcgactaacaaaa, ref-1_30, 30, 666, 45
tgtgcatagagtgactgctc, ref-1_31, 31, 688, 50
cttctttccctctgcaattg, ref-1_32, 32, 710, 45
ggaaggcaatgttttttgca, ref-1_33, 33, 732, 40
tgacggtcgctcttgaaaaa, ref-1_34, 34, 754, 45
acttttcaaggtctgcgcat, ref-1_35, 35, 786, 45
ggctttggtgataaggagaa, ref-1_36, 36, 814, 45
catggatgggaatccaaaga, ref-1_37, 37, 836, 45
atggtggtggaattgggatg, ref-1_38, 38, 858, 50
cggaatgggaagattgggaa, ref-1_39, 39, 880, 50
cattgggaagaatgggaatg, ref-1_40, 40, 902, 45
ttgttgccattggtgccatt, ref-1_41, 41, 924, 45
ggagactgttgagattttgg, ref-1_42, 42, 946, 45
ggtggagaatccagtgaata, ref-1_43, 43, 970, 45
cgaagaagtatcggatgatg, ref-1_44, 44, 992, 45
gtggatggtgtttcgattga, ref-1_45, 45, 1015, 45
ggaattcgagttctcatttg, ref-1_46, 46, 1037, 40
ctctttcttgaagctttagg, ref-1_47, 47, 1060, 40
ttcccatggtctgaacagct, ref-1_48, 48, 1082, 50
