Van Oudenaarden Lab:ZK993.1: Difference between revisions
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>ZK993.1 (ceh-45 spliced coding region) | |||
actgaagaatcgcatcccccactacggtgtgacac | |||
atggcatccttcccgtttttaatgacacctgaaactatgaacaaattggtgacgccgaattctgcaagtatctcctcgtc | |||
atcctcctctccgtccacatcaacctcattctcaattgacacattgctctcgaacccgttggccggaattccgcagcttc | |||
acaattttcaagatccatttggagcagtgggagccgcagcggcggcttctgccctgccatggcagtttcatccggctaat | |||
tatccgtttttctcaatgctctgcggaccactaatgcctccattcatggctccatatcaccatcaacactacgcctcccg | |||
acgaaaacgccggcatcgtaccattttcagcgaggagcagttgaacattttggagaccacattttcaacgacacactacc | |||
cggacgctacgacgagagaagagctcgcggttcagtgctcattgaaggaagaaagagttgaggtctggttcaaaaatcgt | |||
cgggcaaaagagcgcaagcagaagaaggacgacagtcggacttctaagcacagcggagacgattccgaatgtgacgagag | |||
cgacgaggacacccgaaaagtgaaacggataaaacgcgaaaattccagcggaaaagagacgagctcgcccgaatcaaaag | |||
cctcactgaagacatcgcacagcgagaatttggtgttggagccttgttag | |||
catataatttgaatctctattccccacctagctggaaatccaggccacc | |||
ccctctttatattctagtcccccccatcccctctcattttgtcaagtcaataaa | |||
---- | |||
Name of probe set: ceh-45 | |||
Probes designed on Mon, 01 Mar 10 13:49:58 -0700 | |||
37 probes designed for target of length 828 (target too short for 48 probes) | |||
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC | |||
gggggatgcgattcttcagt, ceh-45_1, 1, 1, 55 | |||
atgccatgtgtcacaccgta, ceh-45_2, 2, 23, 50 | |||
caggtgtcattaaaaacggg, ceh-45_3, 3, 47, 45 | |||
cgtcaccaatttgttcatag, ceh-45_4, 4, 70, 40 | |||
aggagatacttgcagaattc, ceh-45_5, 5, 92, 40 | |||
gtggacggagaggaggatga, ceh-45_6, 6, 114, 60 | |||
gtcaattgagaatgaggttg, ceh-45_7, 7, 136, 40 | |||
ccaacgggttcgagagcaat, ceh-45_8, 8, 158, 55 | |||
attgtgaagctgcggaattc, ceh-45_9, 9, 181, 45 | |||
ctgctccaaatggatcttga, ceh-45_10, 10, 203, 45 | |||
agaagccgccgctgcggctc, ceh-45_11, 11, 226, 75 | |||
gatgaaactgccatggcagg, ceh-45_12, 12, 248, 55 | |||
gagaaaaacggataattagc, ceh-45_13, 13, 270, 35 | |||
cattagtggtccgcagagca, ceh-45_14, 14, 292, 55 | |||
gatatggagccatgaatgga, ceh-45_15, 15, 314, 45 | |||
tcgggaggcgtagtgttgat, ceh-45_16, 16, 337, 55 | |||
tggtacgatgccggcgtttt, ceh-45_17, 17, 359, 55 | |||
ttcaactgctcctcgctgaa, ceh-45_18, 18, 381, 50 | |||
cgttgaaaatgtggtctcca, ceh-45_19, 19, 406, 45 | |||
tcgtagcgtccgggtagtgt, ceh-45_20, 20, 428, 60 | |||
tgaaccgcgagctcttctct, ceh-45_21, 21, 450, 55 | |||
tctttcttccttcaatgagc, ceh-45_22, 22, 472, 40 | |||
gatttttgaaccagacctca, ceh-45_23, 23, 494, 40 | |||
tgcttgcgctcttttgcccg, ceh-45_24, 24, 516, 60 | |||
agtccgactgtcgtccttct, ceh-45_25, 25, 538, 55 | |||
aatcgtctccgctgtgctta, ceh-45_26, 26, 560, 50 | |||
tcgtcgctctcgtcacattc, ceh-45_27, 27, 582, 55 | |||
ccgtttcacttttcgggtgt, ceh-45_28, 28, 604, 50 | |||
cgctggaattttcgcgtttt, ceh-45_29, 29, 626, 45 | |||
tcgggcgagctcgtctcttt, ceh-45_30, 30, 648, 60 | |||
tgtcttcagtgaggcttttg, ceh-45_31, 31, 670, 45 | |||
acaccaaattctcgctgtgc, ceh-45_32, 32, 692, 50 | |||
attatatgctaacaaggctc, ceh-45_33, 33, 714, 35 | |||
taggtggggaatagagattc, ceh-45_34, 34, 736, 45 | |||
agagggggtggcctggattt, ceh-45_35, 35, 761, 60 | |||
gatgggggggactagaatat, ceh-45_36, 36, 783, 50 | |||
ttgacttgacaaaatgagag, ceh-45_37, 37, 805, 35 |
Latest revision as of 13:50, 1 March 2010
Progress:
Probes designed: (03-01-2010 - Alexander van Oudenaarden)
Probes coupled:
Probes purified:
Probes tested:
Dyes available:
>ZK993.1 (ceh-45 spliced coding region)
actgaagaatcgcatcccccactacggtgtgacac
atggcatccttcccgtttttaatgacacctgaaactatgaacaaattggtgacgccgaattctgcaagtatctcctcgtc atcctcctctccgtccacatcaacctcattctcaattgacacattgctctcgaacccgttggccggaattccgcagcttc acaattttcaagatccatttggagcagtgggagccgcagcggcggcttctgccctgccatggcagtttcatccggctaat tatccgtttttctcaatgctctgcggaccactaatgcctccattcatggctccatatcaccatcaacactacgcctcccg acgaaaacgccggcatcgtaccattttcagcgaggagcagttgaacattttggagaccacattttcaacgacacactacc cggacgctacgacgagagaagagctcgcggttcagtgctcattgaaggaagaaagagttgaggtctggttcaaaaatcgt cgggcaaaagagcgcaagcagaagaaggacgacagtcggacttctaagcacagcggagacgattccgaatgtgacgagag cgacgaggacacccgaaaagtgaaacggataaaacgcgaaaattccagcggaaaagagacgagctcgcccgaatcaaaag cctcactgaagacatcgcacagcgagaatttggtgttggagccttgttag
catataatttgaatctctattccccacctagctggaaatccaggccacc ccctctttatattctagtcccccccatcccctctcattttgtcaagtcaataaa
Name of probe set: ceh-45
Probes designed on Mon, 01 Mar 10 13:49:58 -0700
37 probes designed for target of length 828 (target too short for 48 probes)
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
gggggatgcgattcttcagt, ceh-45_1, 1, 1, 55
atgccatgtgtcacaccgta, ceh-45_2, 2, 23, 50
caggtgtcattaaaaacggg, ceh-45_3, 3, 47, 45
cgtcaccaatttgttcatag, ceh-45_4, 4, 70, 40
aggagatacttgcagaattc, ceh-45_5, 5, 92, 40
gtggacggagaggaggatga, ceh-45_6, 6, 114, 60
gtcaattgagaatgaggttg, ceh-45_7, 7, 136, 40
ccaacgggttcgagagcaat, ceh-45_8, 8, 158, 55
attgtgaagctgcggaattc, ceh-45_9, 9, 181, 45
ctgctccaaatggatcttga, ceh-45_10, 10, 203, 45
agaagccgccgctgcggctc, ceh-45_11, 11, 226, 75
gatgaaactgccatggcagg, ceh-45_12, 12, 248, 55
gagaaaaacggataattagc, ceh-45_13, 13, 270, 35
cattagtggtccgcagagca, ceh-45_14, 14, 292, 55
gatatggagccatgaatgga, ceh-45_15, 15, 314, 45
tcgggaggcgtagtgttgat, ceh-45_16, 16, 337, 55
tggtacgatgccggcgtttt, ceh-45_17, 17, 359, 55
ttcaactgctcctcgctgaa, ceh-45_18, 18, 381, 50
cgttgaaaatgtggtctcca, ceh-45_19, 19, 406, 45
tcgtagcgtccgggtagtgt, ceh-45_20, 20, 428, 60
tgaaccgcgagctcttctct, ceh-45_21, 21, 450, 55
tctttcttccttcaatgagc, ceh-45_22, 22, 472, 40
gatttttgaaccagacctca, ceh-45_23, 23, 494, 40
tgcttgcgctcttttgcccg, ceh-45_24, 24, 516, 60
agtccgactgtcgtccttct, ceh-45_25, 25, 538, 55
aatcgtctccgctgtgctta, ceh-45_26, 26, 560, 50
tcgtcgctctcgtcacattc, ceh-45_27, 27, 582, 55
ccgtttcacttttcgggtgt, ceh-45_28, 28, 604, 50
cgctggaattttcgcgtttt, ceh-45_29, 29, 626, 45
tcgggcgagctcgtctcttt, ceh-45_30, 30, 648, 60
tgtcttcagtgaggcttttg, ceh-45_31, 31, 670, 45
acaccaaattctcgctgtgc, ceh-45_32, 32, 692, 50
attatatgctaacaaggctc, ceh-45_33, 33, 714, 35
taggtggggaatagagattc, ceh-45_34, 34, 736, 45
agagggggtggcctggattt, ceh-45_35, 35, 761, 60
gatgggggggactagaatat, ceh-45_36, 36, 783, 50
ttgacttgacaaaatgagag, ceh-45_37, 37, 805, 35