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[[Image:Thiago.jpeg|thumb|right|Thiago Motta Venancio (December/2007)]]


==Background | Introdução ==
==Background | Introdução ==
[[Image:Thiago.jpeg|150px|right|Thiago Motta Venancio (December/2007)]]
I am a biologist with deep interest in the application of computational methods to understand complex biological problems and their evolutionary basis. I joined Universidade Estadual do Norte Fluminense as an associate Professor in October/2010.  
I am a biologist with deep interest in the application of computational methods to understand complex biological problems and their evolutionary basis. I joined Universidade Estadual do Norte Fluminense as an associate Professor in October/2010.  


[[Image:Brazil-Flag-icon.png]] Sou um biólogo com profundo interesse na aplicação de métodos computacionais para o entendimento de problemas biológicos complexos e suas bases evolutivas. Ingressei na Universidade Estadual do Norte Fluminense como professor associado em Outubro/2010.  
[[Image:Brazil-Flag-icon.png]] Sou um biólogo com profundo interesse na aplicação de métodos computacionais para o entendimento de problemas biológicos complexos e suas bases evolutivas. Ingressei na Universidade Estadual do Norte Fluminense como professor associado em Outubro/2010.  


'''A complete version of my CV can be found [http://buscatextual.cnpq.br/buscatextual/visualizacv.jsp?id=K4765549P3 here] (in Portuguese).'''<p></p>
'''A complete version of my CV can be found [http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4765549P3 here] (in Portuguese).'''<p></p>
[[Image:Brazil-Flag-icon.png]] '''Uma versão completa do meu CV pode ser encontrada  [http://buscatextual.cnpq.br/buscatextual/visualizacv.jsp?id=K4765549P3 aqui] (em português).'''<p></p>
[[Image:Brazil-Flag-icon.png]] '''Uma versão completa do meu CV pode ser encontrada  [http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4765549P3 aqui] (em português).'''<p></p>


==Education | Formação ==
==Education | Formação ==
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* 1998 - 2001, BSc in Biological Sciences | Graduação em Ciências Biológicas, Universidade Estadual do Norte Fluminense
* 1998 - 2001, BSc in Biological Sciences | Graduação em Ciências Biológicas, Universidade Estadual do Norte Fluminense


==Publications | Publicações==
==Publications (2004-PRESENT) ==


<ol reversed>
<ol reversed>
<br>
<br>
<li>Jacinto DS, Muniz H, '''Venancio TM''', Wilson RA, Verjovski-Almeida S, DeMarco R. Curupira-1 and Curupira-2, two novel Mutator-like DNA transposon from the genomes of human parasites Schistosoma mansoni and Schistosoma japonicum. ''Parasitology'', accepted.<p></p>
 
<li> '''Vidal NM''', '''Grazziotin AL''', Iyer LM, Aravind L<sup>[[Image:Envelope.png|13px]]</sup>, '''Venancio TM'''<sup>[[Image:Envelope.png|13px]]</sup>. Transcription factors, chromatin proteins and the diversification of Hemiptera. [http://www.ncbi.nlm.nih.gov/pubmed/26226651 Insect Biochemistry and Molecular Biology 2016]<p></p>
 
<li> Bottino-Rojas V, Talyuli OA, Jupatanakul N, Sim S, Dimopoulos G, '''Venancio TM''', Bahia AC, Sorgine MH, Oliveira PL, Paiva-Silva GO. Heme Signaling Impacts Global Gene Expression, Immunity and Dengue Virus Infectivity in Aedes aegypti. [http://www.ncbi.nlm.nih.gov/pubmed/26275150 PLoS One 2015]<p></p>
 
<li> Almeida GT, Lage RC, Anderson L, '''Venancio TM''', Nakaya HI, Miyasato PA, Rofatto HK, Zerlotini A, Nakano E, Oliveira G, Verjovski-Almeida S. Synergy of Omeprazole and Praziquantel In Vitro Treatment against Schistosoma mansoni Adult Worms. [http://www.ncbi.nlm.nih.gov/pubmed/26402251 PLoS Neglected Tropical Diseases 2015]<p></p>
 
<li> Mesquita RD, Vionette-Amaral RJ, /MULTIPLE AUTHORS/, '''Venancio TM''', Walter-Nuno AB, Wilson D, Warren WC, Wilson RK, Huebner E, Dotson EM, Oliveira PL. Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection. [http://www.ncbi.nlm.nih.gov/pubmed/26627243 Proc Natl Acad Sci USA 2015 ]<p></p>
 
<li> '''Grazziotin AL '''<sup>[[Image:Envelope.png|13px]]</sup>, '''Vidal NM''', '''Venancio TM '''<sup>[[Image:Envelope.png|13px]]</sup>. Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea. [http://www.ncbi.nlm.nih.gov/pubmed/26084810 The FEBS Journal 2015]<p></p>
 
<li> '''Vidal N '''<sup>[[Image:Envelope.png|13px]]</sup>, '''Grazziotin AL''', Cancela HCR, Pereira MG, '''Venancio TM '''<sup>[[Image:Envelope.png|13px]]</sup>. Development of a gene-centered SSR atlas as a resource for papaya (Carica papaya) marker-assisted selection and population genetic studies.[http://www.ncbi.nlm.nih.gov/pubmed/25393538  PLoS ONE 2014]<p></p>
 
<li> '''Gossani C''', '''Bellieny-Rabelo D''', '''Venancio TM'''<sup>[[Image:Envelope.png|13px]]</sup>. Evolutionary analysis of multidrug resistance genes in fungi – impact of gene duplication and family conservation.[http://www.ncbi.nlm.nih.gov/pubmed/25220072 FEBS Journal 2014]<p></p>
 
<li> de Sá LF, Wermelinger TT, Ribeiro Eda S, Gravina Gde A, Fernandes KV, Xavier-Filho J,'''Venancio TM''', Rezende GL<sup>[[Image:Envelope.png|13px]]</sup>, Oliveira AE<sup>[[Image:Envelope.png|13px]]</sup>. Effects of Phaseolus vulgaris (Fabaceae) seed coat on the embryonic and larval development of the cowpea weevil Callosobruchus maculatus (Coleoptera: Bruchidae).[http://www.ncbi.nlm.nih.gov/pubmed/24211390 J Insect Physiol 2014]<p></p>
 
<li> '''Bellieny-Rabelo D''', Oliveira AEA, '''Venancio TM'''<sup>[[Image:Envelope.png|13px]]</sup>. Impact of whole-genome and tandem duplications in the expansion and functional diversification of the F-box family in legumes (Fabaceae). [http://www.ncbi.nlm.nih.gov/pubmed/23390519 PLoS ONE 2013] <p></p>
 
<li> Oliveira EA, Romeiro NC, Ribeiro ES, Santa-Catarina C, Oliveira AE, Silveira V, de Souza Filho GA, '''Venancio TM'''<sup>[[Image:Envelope.png|13px]]</sup>, Cruz MA<sup>[[Image:Envelope.png|13px]]</sup>. Structural and functional characterization of the protein kinase Mps1 in Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/23049844 PLoS One], 2012. <p></p>
 
<li> '''Venancio TM''' <sup>[[Image:Envelope.png|13px]]</sup>, '''Bellieny-Rabelo D''', Aravind L. Evolutionary and biochemical aspects of chemical stress resistance in Saccharomyces. [http://www.ncbi.nlm.nih.gov/pubmed/22479268 Frontiers in Genetics] 2012.<p></p>
 
<li> Souza AJ, Ferreira AT, Perales J, Beghini DG, Fernandes KV, Xavier-Filho J, '''Venancio TM''', Oliveira AE <sup>[[Image:Envelope.png|13px]]</sup>. Identification of Albizia lebbeck seed coat chitin-binding vicilins (7S globulins) with high toxicity to the larvae of the bruchid Callosobruchus maculatus.[http://www.ncbi.nlm.nih.gov/pubmed/22267002 Braz J Med Biol Res 2012]<p></p>
 
<li> Jacinto DS, Muniz Hdos S, '''Venancio TM''', Wilson RA, Verjovski-Almeida S, Demarco R <sup>[[Image:Envelope.png|13px]]</sup>. Curupira-1 and Curupira-2, two novel Mutator-like DNA transposons from the genomes of human parasites Schistosoma mansoni and Schistosoma japonicum. [http://www.ncbi.nlm.nih.gov/pubmed/21756422 Parasitology 2011]<p></p>


<li>Oakley MS, Anantharaman V, '''Venancio TM''', Zheng H, Mahajan B, Majam V , McCutchan TF, Myers TG, Aravind L, Kumar S. Molecular Correlates of Experimental Cerebral Malaria Detectable in Whole Blood. ''Infection and Immunity'', 2011.<p></p>
<li>Oakley MS, Anantharaman V, '''Venancio TM''', Zheng H, Mahajan B, Majam V , McCutchan TF, Myers TG, Aravind L, Kumar S. Molecular Correlates of Experimental Cerebral Malaria Detectable in Whole Blood. ''Infection and Immunity'', 2011.<p></p>


<li>'''Venancio TM''', Balaji S, Geetha S, Aravind L. Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions. ''Molecular BioSystems'', 2010.<p></p>
<li>'''Venancio TM''' <sup>[[Image:Envelope.png|13px]]</sup>, Balaji S, Geetha S, Aravind L. Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions. ''Molecular BioSystems'', 2010.<p></p>


<li>'''Venancio TM''', Aravind L. CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes. ''Bioinformatics'', 2010.<p></p>
<li>'''Venancio TM''', Aravind L. CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes. ''Bioinformatics'', 2010.<p></p>


<li>'''Venancio TM''', Balaji S, Aravind L. High-confidence mapping of chemical compounds and protein complexes reveals novel aspects of chemical stress response in yeast. Molecular Biosystems, 2010.<p></p>
<li>'''Venancio TM''' <sup>[[Image:Envelope.png|13px]]</sup>, Balaji S, Aravind L. High-confidence mapping of chemical compounds and protein complexes reveals novel aspects of chemical stress response in yeast. Molecular Biosystems, 2010.<p></p>


<li>Oliveira KCP, Carvalho ML, '''Venancio TM''', Miyasato PA, Kawano T, DeMarco R, Verjovski-Almeida S. Identification of Schistosoma mansoni TNF-alpha receptor gene and the effect of human TNF-alpha on the parasite gene expression profile. Plos Neglected Tropical Diseases, 2009.<p></p>
<li>Oliveira KCP, Carvalho ML, '''Venancio TM''', Miyasato PA, Kawano T, DeMarco R, Verjovski-Almeida S. Identification of Schistosoma mansoni TNF-alpha receptor gene and the effect of human TNF-alpha on the parasite gene expression profile. Plos Neglected Tropical Diseases, 2009.<p></p>
Line 41: Line 65:
<li>Soares JB, Menezes D, Vannier MA, Ferreira-Pereira A, Almeida GT, '''Venancio TM''', Verjovski-Almeida, S, Zishiri VK, Kuter D, Hunter R, Egan, TJ, Oliveira MF. Interference with hemozoin formation represents an important mechanism of schistosomicidal action of antimalarial quinoline methanols. PLoS Neglected Tropical Diseases, 2009.<p></p>
<li>Soares JB, Menezes D, Vannier MA, Ferreira-Pereira A, Almeida GT, '''Venancio TM''', Verjovski-Almeida, S, Zishiri VK, Kuter D, Hunter R, Egan, TJ, Oliveira MF. Interference with hemozoin formation represents an important mechanism of schistosomicidal action of antimalarial quinoline methanols. PLoS Neglected Tropical Diseases, 2009.<p></p>


<li>'''Venancio TM''', Aravind L. Reconstructing prokaryotic transcriptional regulatory networks: lessons from actinobacteria. Journal of Biology, 2009. <p></p>
<li>'''Venancio TM''' <sup>[[Image:Envelope.png|13px]]</sup>, Aravind L. Reconstructing prokaryotic transcriptional regulatory networks: lessons from actinobacteria. Journal of Biology, 2009. <p></p>


<li>'''Venancio TM''', Balaji S, Iyer LM, Aravind L. Reconstructing the ubiquitin network - cross-talk with other systems and identification of novel
<li>'''Venancio TM''' <sup>[[Image:Envelope.png|13px]]</sup>, Balaji S, Iyer LM, Aravind L. Reconstructing the ubiquitin network - cross-talk with other systems and identification of novel
functions. Genome Biology, 2009. [HIGHLY ACCESSED] <p></p>  
functions. Genome Biology, 2009. [HIGHLY ACCESSED] <p></p>  


Line 62: Line 86:
<li>'''Venancio TM''', DeMarco R, Oliveira KCP, Simoes ACQ, Silva AM, Verjovski-Almeida S. Genomics and Gene Expression Management Tools for the Schistosoma mansoni cDNA Microarray Project. Lecture Notes in Computer Science, 2005.<p></p>  
<li>'''Venancio TM''', DeMarco R, Oliveira KCP, Simoes ACQ, Silva AM, Verjovski-Almeida S. Genomics and Gene Expression Management Tools for the Schistosoma mansoni cDNA Microarray Project. Lecture Notes in Computer Science, 2005.<p></p>  


<li>'''Venancio TM''', Oliveira AE, Silva LB, Machado OL, Fernandes KV, Xavier-Filho J. A protein with amino acid sequence homology to bovine insulin is present in the legume Vigna unguiculata (cowpea). Brazilian Journal of Medical and Biological Research, 2003.<p></p>
</ol>
 
<li>Silva LB, Santos SS, Azevedo CR, Cruz MA, '''Venancio TM''', Cavalcante CP, Uchoa AF, Astolfi Filho S, Oliveira AE, Fernandes KV and Xavier-Filho J. The leaves of green plants as well as a cyanobacterium, a red alga, and fungi contain insulin-like antigens. Brazilian Journal of Medical and Biological Research, 2002.<p></p>
 
<li>Oliveira AEA, Azevedo CR, '''Venancio TM''', Silva LB, Fernandes KVS, Lopes MAC, Cunha M, Machado OLT, Astolfi-Filho S and Xavier-Filho J. Insulina de plantas. Biotecnologia, Ciencia e Desenvolvimento, 2001.<p></p>
 
<li>Oliveira AEA, Azevedo CR, '''Venancio TM''', Machado OLT, Xavier-Filho J. Presença de insulina em plantas: função biológica e possível validação de sua utilização no tratamento do diabetes. Diabetes Clinica, 2000.<p></p>
 
</ol>  
 


== Contact | Contato ==
== Contact | Contato ==
thiago |dot| venancio |at| gmail |dot| com
thiago |dot| venancio |at| gmail |dot| com
*[[Special:Emailuser/Thiago Motta Venancio|Email me through OpenWetWare]]
*[[Special:Emailuser/Thiago Motta Venancio|Email me through OpenWetWare]]

Latest revision as of 13:04, 8 August 2016


Background | Introdução

Thiago Motta Venancio (December/2007)
Thiago Motta Venancio (December/2007)

I am a biologist with deep interest in the application of computational methods to understand complex biological problems and their evolutionary basis. I joined Universidade Estadual do Norte Fluminense as an associate Professor in October/2010.

Sou um biólogo com profundo interesse na aplicação de métodos computacionais para o entendimento de problemas biológicos complexos e suas bases evolutivas. Ingressei na Universidade Estadual do Norte Fluminense como professor associado em Outubro/2010.

A complete version of my CV can be found here (in Portuguese).

Uma versão completa do meu CV pode ser encontrada aqui (em português).

Education | Formação

  • 2008 - 2010, Post-doctorate | Pós-doutorado, National Center for Biotechnology Information (NCBI),NIH
  • 2004 - 2008, PhD in Bioinformatics | Doutorado em Bioinformática, Universidade de Sao Paulo
  • 2001 - 2004, MSc in Biosciences and Biotechnology | Mestrado em Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense
  • 1998 - 2001, BSc in Biological Sciences | Graduação em Ciências Biológicas, Universidade Estadual do Norte Fluminense

Publications (2004-PRESENT)


  1. Vidal NM, Grazziotin AL, Iyer LM, Aravind L, Venancio TM. Transcription factors, chromatin proteins and the diversification of Hemiptera. Insect Biochemistry and Molecular Biology 2016

  2. Bottino-Rojas V, Talyuli OA, Jupatanakul N, Sim S, Dimopoulos G, Venancio TM, Bahia AC, Sorgine MH, Oliveira PL, Paiva-Silva GO. Heme Signaling Impacts Global Gene Expression, Immunity and Dengue Virus Infectivity in Aedes aegypti. PLoS One 2015

  3. Almeida GT, Lage RC, Anderson L, Venancio TM, Nakaya HI, Miyasato PA, Rofatto HK, Zerlotini A, Nakano E, Oliveira G, Verjovski-Almeida S. Synergy of Omeprazole and Praziquantel In Vitro Treatment against Schistosoma mansoni Adult Worms. PLoS Neglected Tropical Diseases 2015

  4. Mesquita RD, Vionette-Amaral RJ, /MULTIPLE AUTHORS/, Venancio TM, Walter-Nuno AB, Wilson D, Warren WC, Wilson RK, Huebner E, Dotson EM, Oliveira PL. Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection. Proc Natl Acad Sci USA 2015

  5. Grazziotin AL , Vidal NM, Venancio TM . Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea. The FEBS Journal 2015

  6. Vidal N , Grazziotin AL, Cancela HCR, Pereira MG, Venancio TM . Development of a gene-centered SSR atlas as a resource for papaya (Carica papaya) marker-assisted selection and population genetic studies.PLoS ONE 2014

  7. Gossani C, Bellieny-Rabelo D, Venancio TM. Evolutionary analysis of multidrug resistance genes in fungi – impact of gene duplication and family conservation.FEBS Journal 2014

  8. de Sá LF, Wermelinger TT, Ribeiro Eda S, Gravina Gde A, Fernandes KV, Xavier-Filho J,Venancio TM, Rezende GL, Oliveira AE. Effects of Phaseolus vulgaris (Fabaceae) seed coat on the embryonic and larval development of the cowpea weevil Callosobruchus maculatus (Coleoptera: Bruchidae).J Insect Physiol 2014

  9. Bellieny-Rabelo D, Oliveira AEA, Venancio TM. Impact of whole-genome and tandem duplications in the expansion and functional diversification of the F-box family in legumes (Fabaceae). PLoS ONE 2013

  10. Oliveira EA, Romeiro NC, Ribeiro ES, Santa-Catarina C, Oliveira AE, Silveira V, de Souza Filho GA, Venancio TM, Cruz MA. Structural and functional characterization of the protein kinase Mps1 in Arabidopsis thaliana. PLoS One, 2012.

  11. Venancio TM , Bellieny-Rabelo D, Aravind L. Evolutionary and biochemical aspects of chemical stress resistance in Saccharomyces. Frontiers in Genetics 2012.

  12. Souza AJ, Ferreira AT, Perales J, Beghini DG, Fernandes KV, Xavier-Filho J, Venancio TM, Oliveira AE . Identification of Albizia lebbeck seed coat chitin-binding vicilins (7S globulins) with high toxicity to the larvae of the bruchid Callosobruchus maculatus.Braz J Med Biol Res 2012

  13. Jacinto DS, Muniz Hdos S, Venancio TM, Wilson RA, Verjovski-Almeida S, Demarco R . Curupira-1 and Curupira-2, two novel Mutator-like DNA transposons from the genomes of human parasites Schistosoma mansoni and Schistosoma japonicum. Parasitology 2011

  14. Oakley MS, Anantharaman V, Venancio TM, Zheng H, Mahajan B, Majam V , McCutchan TF, Myers TG, Aravind L, Kumar S. Molecular Correlates of Experimental Cerebral Malaria Detectable in Whole Blood. Infection and Immunity, 2011.

  15. Venancio TM , Balaji S, Geetha S, Aravind L. Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions. Molecular BioSystems, 2010.

  16. Venancio TM, Aravind L. CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes. Bioinformatics, 2010.

  17. Venancio TM , Balaji S, Aravind L. High-confidence mapping of chemical compounds and protein complexes reveals novel aspects of chemical stress response in yeast. Molecular Biosystems, 2010.

  18. Oliveira KCP, Carvalho ML, Venancio TM, Miyasato PA, Kawano T, DeMarco R, Verjovski-Almeida S. Identification of Schistosoma mansoni TNF-alpha receptor gene and the effect of human TNF-alpha on the parasite gene expression profile. Plos Neglected Tropical Diseases, 2009.

  19. Venancio TM, Wilson RA, , Verjovski-Almeida S, DeMarco R. Bursts of transposition from non-LTR retrotransposon families of the RTE clade in Schistosoma mansoni. International Journal for Parasitology, 2009.

  20. Aravind L, Anantharaman V, Venancio TM. Apprehending Multicellularity: Regulatory Networks, Genomics, and Evolution. Birth Defects Research (Part C), 2009.

  21. Soares JB, Menezes D, Vannier MA, Ferreira-Pereira A, Almeida GT, Venancio TM, Verjovski-Almeida, S, Zishiri VK, Kuter D, Hunter R, Egan, TJ, Oliveira MF. Interference with hemozoin formation represents an important mechanism of schistosomicidal action of antimalarial quinoline methanols. PLoS Neglected Tropical Diseases, 2009.

  22. Venancio TM , Aravind L. Reconstructing prokaryotic transcriptional regulatory networks: lessons from actinobacteria. Journal of Biology, 2009.

  23. Venancio TM , Balaji S, Iyer LM, Aravind L. Reconstructing the ubiquitin network - cross-talk with other systems and identification of novel functions. Genome Biology, 2009. [HIGHLY ACCESSED]

  24. Venancio TM, Cristofoletti PT, Ferreira C, Verjovski-Almeida S,Terra WR. The Aedes aegypti larval transcriptome: a comparative perspective with emphasis on trypsins and the domain structure of peritrophins. Insect Molecular Biology, 2009.

  25. Cardoso FC, Macedo GC, Gava E, Kitten GT, Mati VL, de Melo AL, Caliari MV, Almeida GT, Venancio TM, Verjovski-Almeida S, Oliveira SC. Schistosoma mansoni Tegument Protein Sm29 Is Able to Induce a Th1-Type of Immune Response and Protection against Parasite Infection. PLoS Neglected Tropical Diseases. 2008.

  26. Venancio TM, DeMarco R, Almeida GT, Oliveira KC, Setubal JC, Verjovski-Almeida S. Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions. BMC Genomics, 2007.

  27. Esteves GH, Simoes AC, Souza E, Dias RA, Ospina R, Venancio TM. New insights about host response to smallpox using microarray data. BMC Systems Biology, 2007.

  28. Verjovski-Almeida S, Venancio TM, Oliveira KC, Almeida GT, DeMarco R. Use of a 44k oligoarray to explore the transcriptome of Schistosoma mansoni adult worms. Experimental Parasitology, 2007.

  29. DeMarco R, Venancio TM, Verjovski-Almeida S. SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamily.BMC Evolutionary Biology, 2006.

  30. Demarco R, Oliveira KC, Venancio TM and Verjovski-Almeida S. Gender biased differential alternative splicing patterns of the transcriptional cofactor CA150 gene in Schistosoma mansoni. Molecular and Biochemical Parasitology, 2006.

  31. Venancio TM, DeMarco R, Oliveira KCP, Simoes ACQ, Silva AM, Verjovski-Almeida S. Genomics and Gene Expression Management Tools for the Schistosoma mansoni cDNA Microarray Project. Lecture Notes in Computer Science, 2005.

Contact | Contato

thiago |dot| venancio |at| gmail |dot| com

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