Wikiomics:Crystallography toolbox: Difference between revisions
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====Direct and dual-space methods==== | ====Direct and dual-space methods==== | ||
* SHELX-D [ | * SHELX-D from [http://shelx.uni-ac.gwdg.de/SHELX/ shelex ] | ||
* [http://www.hwi.buffalo.edu/SnB/ Shake and Bake (SnB)] | * [http://www.hwi.buffalo.edu/SnB/ Shake and Bake (SnB)] | ||
* Rantan (from ccp4) | * Rantan (from ccp4) | ||
====Ab initio methods==== | ====Ab initio methods==== |
Revision as of 13:34, 17 January 2008
Crystallography toolbox
Data processing
Data integration
Scaling
Phasing
Molecular replacement
- MolRep (from ccp4)
- Beast (from ccp4)
- AMoRe (from ccp4)
- Phaser (from ccp4)
- EPMR
- Queen of Spades
- COMPANG
- BRUTEPTF (phased molecular replacement)
Heavy atom methods
Patterson methods
Direct and dual-space methods
- SHELX-D from shelex
- Shake and Bake (SnB)
- Rantan (from ccp4)
Ab initio methods
- Acorn (from ccp4)
- Oasis (from ccp4)
Phase refinement
- SHARP/autoSHARP SHARP suite
- Mlphare, Vecref (from ccp4)
- Resolve
- SHELX-E
- DM (from ccp4)
- Dmmulti (from ccp4)
- SOLOMON (from ccp4)
Model building
- Automated model building
- Resolve
- ARP/wARP (from ccp4) http://www.embl-hamburg.de/ARP/
- Fffear, ffjoin (from ccp4)
- Interactive model building
- O (from Uppsala Software Factory)
- coot
- Quanta [1]
- Xtalview
- Turbo Frodo
Model refinement
Structure validation
Utilities
Credits
- Tina Bakolitsa wrote this list
- Darek Kedra translated it into wiki and added links