Wikiomics:NMR Toolbox
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==Spectra processing== | ==Spectra processing== | ||
| - | * | + | * [http://spin.niddk.nih.gov/NMRPipe/ NMRpipe] |
| - | * | + | * [http://spin.niddk.nih.gov/NMRPipe/talos/ Talos](part of NMRpipe) |
| - | + | * [http://spin.niddk.nih.gov/NMRPipe/dynamo/ Dynamo](part of NMRpipe) | |
==Spectra diplay/Assignment== | ==Spectra diplay/Assignment== | ||
| - | * | + | * [http://www.onemoonscientific.com/nmrview/ NMRViewJ] |
==Structure calculation== | ==Structure calculation== | ||
| - | * | + | * [http://xplor.csb.yale.edu/xplor/ xplor](molecular dynamics) |
| - | * | + | * [http://cns.csb.yale.edu/ CNS] |
* dyana (distance restrains) | * dyana (distance restrains) | ||
==Quality checking== | ==Quality checking== | ||
| - | * | + | * [http://www.biochem.ucl.ac.uk/~roman/procheck_nmr/procheck_nmr.html procheck] |
| - | * | + | * [http://tang.bmrb.wisc.edu/~jurgen/aqua/ aqua] |
==Model building== | ==Model building== | ||
| Line 29: | Line 29: | ||
==Molecule display== | ==Molecule display== | ||
| - | * | + | * [http://hugin.ethz.ch/wuthrich/software/molmol/ molmol] |
| - | * | + | * [http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:GRASP grasp] |
| - | * | + | * [http://www.avatar.se/molscript/ molscript] |
* povray | * povray | ||
| - | * | + | * [http://pymol.sourceforge.net/ pymol] |
| - | * | + | * [http://www.umass.edu/microbio/rasmol/ rasmol] |
| - | * | + | * [http://skuld.bmsc.washington.edu/raster3d/ raster3D] |
| - | * | + | * [http://www.expasy.org/spdbv/ DeepView](SWISS-PDBViewer) |
See also: [http://directory.google.com/Top/Science/Chemistry/Software/Structural/Visualization/] | See also: [http://directory.google.com/Top/Science/Chemistry/Software/Structural/Visualization/] | ||
| + | |||
| + | =2B clasified= | ||
| + | * [http://aria.pasteur.fr/documentation/generalities/general-features-of-aria ARIA] | ||
| + | * [http://www.ccpn.ac.uk/ CCPN] Collaborative Computing Project for NMR | ||
| + | |||
| + | =External web sites with NMR software links= | ||
| + | (bit dated as well) | ||
| + | |||
| + | * http://www.spincore.com/nmrinfo/software_s.html | ||
| + | * http://nmr.ioc.ac.ru/li_links.htm | ||
| + | |||
| + | == Credits == | ||
| + | |||
| + | {{credits}} | ||
| + | |||
| + | * [[User:Darked|Darek Kedra]] wrote this tutorial | ||
| + | <!-- other contributors, put yourself here --> | ||
Current revision
NMR Toolbox
Contents |
Spectra processing
Spectra diplay/Assignment
Structure calculation
Quality checking
Model building
- modeller (template based/threading) [1]
Molecule display
See also: [2]
2B clasified
External web sites with NMR software links
(bit dated as well)
Credits
- Darek Kedra wrote this tutorial
