Wikiomics:NMR Toolbox - Revision history

Darek Kedra: links fix/+ARIA etc

Darek Kedra — Thu, 17 Jan 2008 20:24:36 GMT

links fix/+ARIA etc

←Older revision		Revision as of 20:24, 17 January 2008
Line 4:		Line 4:
	==Spectra processing==		==Spectra processing==

-	* ~~NMRpipe~~ [http://spin.niddk.nih.gov/NMRPipe/]	+	* [http://spin.niddk.nih.gov/NMRPipe/ NMRpipe]
-	* ~~Talos (part of NMRpipe)~~ [http://spin.niddk.nih.gov/NMRPipe/talos/]	+	* [http://spin.niddk.nih.gov/NMRPipe/talos/ Talos](part of NMRpipe)
-	* Dynamo (part of NMRpipe) [http://spin.niddk.nih.gov/NMRPipe/dynamo/]	+	* [http://spin.niddk.nih.gov/NMRPipe/dynamo/ Dynamo](part of NMRpipe)

	==Spectra diplay/Assignment==		==Spectra diplay/Assignment==

-	* ~~NMRViewJ~~ [http://www.onemoonscientific.com/nmrview/]	+	* [http://www.onemoonscientific.com/nmrview/ NMRViewJ]

	==Structure calculation==		==Structure calculation==

-	* ~~xplor (molecular dynamics)~~ [http://xplor.csb.yale.edu/xplor/]	+	* [http://xplor.csb.yale.edu/xplor/ xplor](molecular dynamics)
-	* ~~CNS~~ [http://cns.csb.yale.edu/]	+	* [http://cns.csb.yale.edu/ CNS]
	* dyana (distance restrains)		* dyana (distance restrains)

	==Quality checking==		==Quality checking==

-	* ~~procheck~~ [http://www.biochem.ucl.ac.uk/~roman/procheck_nmr/procheck_nmr.html]	+	* [http://www.biochem.ucl.ac.uk/~roman/procheck_nmr/procheck_nmr.html procheck]
-	* ~~aqua~~ [http://tang.bmrb.wisc.edu/~jurgen/aqua/]	+	* [http://tang.bmrb.wisc.edu/~jurgen/aqua/ aqua]

	==Model building==		==Model building==
Line 29:		Line 29:
	==Molecule display==		==Molecule display==

-	* ~~molmol~~ [http://hugin.ethz.ch/wuthrich/software/molmol/]	+	* [http://hugin.ethz.ch/wuthrich/software/molmol/ molmol]
-	* ~~grasp~~ [http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:GRASP]	+	* [http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:GRASP grasp]
-	* ~~molscript~~ [http://www.avatar.se/molscript/]	+	* [http://www.avatar.se/molscript/ molscript]
	* povray		* povray
-	* ~~pymol~~ [http://pymol.sourceforge.net/]	+	* [http://pymol.sourceforge.net/ pymol]
-	* ~~rasmol~~ [http://www.umass.edu/microbio/rasmol/]	+	* [http://www.umass.edu/microbio/rasmol/ rasmol]
-	* ~~raster3D~~ [http://skuld.bmsc.washington.edu/raster3d/]	+	* [http://skuld.bmsc.washington.edu/raster3d/ raster3D]
-	* ~~DeepView (SWISS-PDBViewer)~~[http://www.expasy.org/spdbv/]	+	* [http://www.expasy.org/spdbv/ DeepView](SWISS-PDBViewer)

	See also: [http://directory.google.com/Top/Science/Chemistry/Software/Structural/Visualization/]		See also: [http://directory.google.com/Top/Science/Chemistry/Software/Structural/Visualization/]
		+
		+	=2B clasified=
		+	* [http://aria.pasteur.fr/documentation/generalities/general-features-of-aria ARIA]
		+	* [http://www.ccpn.ac.uk/ CCPN] Collaborative Computing Project for NMR
		+
		+	=External web sites with NMR software links=
		+	(bit dated as well)
		+
		+	* http://www.spincore.com/nmrinfo/software_s.html
		+	* http://nmr.ioc.ac.ru/li_links.htm

	== Credits ==		== Credits ==

Darek Kedra: + credits

Darek Kedra — Fri, 23 Nov 2007 21:47:57 GMT

+ credits

←Older revision		Revision as of 21:47, 23 November 2007
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	See also: [http://directory.google.com/Top/Science/Chemistry/Software/Structural/Visualization/]		See also: [http://directory.google.com/Top/Science/Chemistry/Software/Structural/Visualization/]
		+
		+	== Credits ==
		+
		+	{{credits}}
		+
		+	* [[User:Darked\|Darek Kedra]] wrote this tutorial
		+	<!-- other contributors, put yourself here -->

Bill Flanagan: 1 revision(s)

Bill Flanagan — Tue, 20 Nov 2007 04:00:33 GMT

1 revision(s)

←Older revision

Revision as of 04:00, 20 November 2007

Darked: /* Structure calculation */

Darked — Tue, 14 Nov 2006 21:20:32 GMT

Structure calculation

New page

{{stub}}
'''NMR Toolbox'''

==Spectra processing==

* NMRpipe [http://spin.niddk.nih.gov/NMRPipe/]
* Talos (part of NMRpipe) [http://spin.niddk.nih.gov/NMRPipe/talos/]
* Dynamo (part of NMRpipe) [http://spin.niddk.nih.gov/NMRPipe/dynamo/]

==Spectra diplay/Assignment==

* NMRViewJ [http://www.onemoonscientific.com/nmrview/]

==Structure calculation==

* xplor (molecular dynamics) [http://xplor.csb.yale.edu/xplor/]
* CNS [http://cns.csb.yale.edu/]
* dyana (distance restrains)

==Quality checking==

* procheck [http://www.biochem.ucl.ac.uk/~roman/procheck_nmr/procheck_nmr.html]
* aqua [http://tang.bmrb.wisc.edu/~jurgen/aqua/]

==Model building==

* modeller (template based/threading) [http://salilab.org/modeller/]

==Molecule display==

* molmol [http://hugin.ethz.ch/wuthrich/software/molmol/]
* grasp [http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:GRASP]
* molscript [http://www.avatar.se/molscript/]
* povray
* pymol [http://pymol.sourceforge.net/]
* rasmol [http://www.umass.edu/microbio/rasmol/]
* raster3D [http://skuld.bmsc.washington.edu/raster3d/]
* DeepView (SWISS-PDBViewer)[http://www.expasy.org/spdbv/]

See also: [http://directory.google.com/Top/Science/Chemistry/Software/Structural/Visualization/]