Wikiomics:Phylogenetic databases - Revision history

Torsten Waldminghaus: added tag

Torsten Waldminghaus — Mon, 03 Mar 2008 20:52:20 GMT

added tag

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Torsten Waldminghaus: added tags

Torsten Waldminghaus — Mon, 03 Mar 2008 20:50:42 GMT

added tags

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	* [http://www.treefam.org/ TreeFam] is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families.		* [http://www.treefam.org/ TreeFam] is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families.

-	~~[[Category:Sequence]]~~
-	~~[[Category:Phylogenetics]]~~

	{{Paul P. Gardner}}		{{Paul P. Gardner}}
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Bill Flanagan: 1 revision(s)

Bill Flanagan — Tue, 20 Nov 2007 04:00:41 GMT

1 revision(s)

←Older revision

Revision as of 04:00, 20 November 2007

75.36.160.62 at 15:19, 11 May 2007

75.36.160.62 — Fri, 11 May 2007 15:19:32 GMT

New page

* [http://phylogenomics.berkeley.edu/phylofacts/ PhyloFacts] The PhyloFacts resource provides multiple sequence alignments, phylogenetic trees, hidden Markov models, predicted 3D structures, predicted subfamilies and annotation data for protein families across the Tree of Life. PhyloFacts currently has >40K protein family "books", some of which are constructed for individual protein structure domains, while the majority represent proteins clustered into global homology groups (proteins sharing the same domain architecture). This second type of clustering allows biologists to infer a molecular function (and possible cellular role) for proteins. Data can be downloaded from the resource, and sequences can be submitted for classification to families and subfamilies.
* [http://tolweb.org/tree/ Tree of Life] A huge resource of phylogenetic information.
* [http://www.treebase.org/treebase/ TreeBase] is a relational database storing phylogenetic trees and the data matrices used to generate them from published research papers.
* [http://www.treefam.org/ TreeFam] is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families.

[[Category:Sequence]]
[[Category:Phylogenetics]]

{{Paul P. Gardner}}