http://www.openwetware.org/index.php?title=Wikiomics:SAGE&feed=atom&action=history 2013-06-19T03:20:26Z Revision history for this page on the wiki MediaWiki 1.13.2 http://www.openwetware.org/index.php?title=Wikiomics:SAGE&diff=225649&oldid=prev 2008-07-29T17:57:24Z

<p>+Category</p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 17:57, 29 July 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 20:</td> <td colspan="2" class="diff-lineno">Line 20:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [http://tagcalling.mbgproject.org/ SAGEnhaft] R package</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [http://tagcalling.mbgproject.org/ SAGEnhaft] R package</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">{{stub}}</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[[Category:Protocol]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[[Category:In silico]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[[Category:Sequence analysis]]</ins></div></td></tr> <!-- diff generator: internal 2013-06-19 03:20:26 --> </table>

Darek Kedra http://www.openwetware.org/index.php?title=Wikiomics:SAGE&diff=221460&oldid=prev 2008-07-16T17:53:20Z

<p>SAGEnhaft]</p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 17:53, 16 July 2008</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 17:</td> <td colspan="2" class="diff-lineno">Line 17:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [http://biobase.biotech.kth.se/thp1a/thp1a.html ExProView]&nbsp; [http://biobase.biotech.kth.se/thp1a/exproview_guide.html Guide] (software from 2000)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [http://biobase.biotech.kth.se/thp1a/thp1a.html ExProView]&nbsp; [http://biobase.biotech.kth.se/thp1a/exproview_guide.html Guide] (software from 2000)</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [http://research.nhgri.nih.gov/eSAGE/ eSAGE] &quot;comprehensive software package for managing and analyzig data generated by Serial Analysis of Gene Expression&quot; Windows only?</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [http://research.nhgri.nih.gov/eSAGE/ eSAGE] &quot;comprehensive software package for managing and analyzig data generated by Serial Analysis of Gene Expression&quot; Windows only?</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* [http://tagcalling.mbgproject.org/ SAGEnhaft] R package</ins></div></td></tr> <!-- diff generator: internal 2013-06-19 03:20:26 --> </table>

Darek Kedra http://www.openwetware.org/index.php?title=Wikiomics:SAGE&diff=221451&oldid=prev 2008-07-16T17:33:57Z

<p>init</p> <p><b>New page</b></p><div>'''SAGE''' Serial Analysis of Gene Expression<br /> <br /> ==Software &amp; databasese==<br /> * [http://www.sagenet.org/protocol/ SAGE Software @Johns Hopkins (SAGE300?)] requires signing/faxing MTA<br /> * [http://www.ncbi.nlm.nih.gov/SAGE/ SAGE Maqp @NCBI] in a stage of rewrite 080716.<br /> * SAGE virtual northern @NCBI -&gt; not working 080716.<br /> <br /> * [http://cgap.nci.nih.gov/SAGE SAGE Genie] portal with data and tools<br /> <br /> * [http://telethon.bio.unipd.it/bioinfo/IDEG6_form/ IDEG6] <br /> allows identification of differentially expressed genes by statistical analysis of large matrices of multiconditional expression data (ESTs or SAGE tags counts), the selection of different test statistics, possibly with Bonferroni correction and the display of result tables, linked to the GenBank, UniGene or LocusLink database. <br /> <br /> * [http://mouse.img.cas.cz/sage/ Mouse SAGE data]<br /> <br /> * [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/11/953 POWER_SAGE(HTM)] available from authors. It can run virtual experiments and help to plan real ones. <br /> <br /> * [http://biobase.biotech.kth.se/thp1a/thp1a.html ExProView] [http://biobase.biotech.kth.se/thp1a/exproview_guide.html Guide] (software from 2000)<br /> * [http://research.nhgri.nih.gov/eSAGE/ eSAGE] &quot;comprehensive software package for managing and analyzig data generated by Serial Analysis of Gene Expression&quot; Windows only?</div>

Darek Kedra