Wilke:ParseDSSP: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
(New page: Here is a python script created to allow easy parsing of DSSP files. To use it: Load the script in python: import DSSPData as dd Instantiate an object instance: dd_ob = dd.DSSPDat...) |
No edit summary |
||
Line 1: | Line 1: | ||
[[Image:DSSPData.txt]] is a python script created to allow easy parsing of DSSP files. | |||
To use it: | To use it: |
Revision as of 01:17, 21 February 2012
File:DSSPData.txt is a python script created to allow easy parsing of DSSP files.
To use it:
Load the script in python:
import DSSPData as dd
Instantiate an object instance:
dd_ob = dd.DSSPData()
Input a dssp data file:
dd_ob.parseDSSP( dssp_file_name )
To get data for example:
accesibilities = dd_ob.getACC()
Will return all of the solvent accesibilties. Each column in the dssp output file has its own getter. Here are all the getters:
getResnums() getChainType() getAAs() getSecStruc() getBP1() getBP2() getACC() getH_NHO1() getH_NHO2() getH_OHN1() getH_OHN2() getTCO() getKAPPA() getALPHA() getPHI() getPSI() getX() getY() getZ()
The secondary structure method does not strip white space because it is necessary for decoding the output.