Wilke:Publications

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THE WILKE LAB

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2009

1. Steinmeyer SH and Wilke CO. Lethal mutagenesis in a structured environment. J Theor Biol. 2009 Nov 7;261(1):67-73. DOI:10.1016/j.jtbi.2009.07.014 |
2. Brennan TP, Woods JO, Sedaghat AR, Siliciano JD, Siliciano RF, and Wilke CO. Analysis of human immunodeficiency virus type 1 viremia and provirus in resting CD4+ T cells reveals a novel source of residual viremia in patients on antiretroviral therapy. J Virol. 2009 Sep;83(17):8470-81. DOI:10.1128/JVI.02568-08 |
3. Sedaghat AR, Siliciano RF, and Wilke CO. Constraints on the dominant mechanism for HIV viral dynamics in patients on raltegravir. Antivir Ther. 2009;14(2):263-71.
4. Zhou T, Weems M, and Wilke CO. Translationally optimal codons associate with structurally sensitive sites in proteins. Mol Biol Evol. 2009 Jul;26(7):1571-80. DOI:10.1093/molbev/msp070 |

2008

5. Zhou T, Enyeart PJ, and Wilke CO. Detecting clusters of mutations. PLoS One. 2008;3(11):e3765. DOI:10.1371/journal.pone.0003765 |
6. Novella IS, Dutta RN, and Wilke CO. A linear relationship between fitness and the logarithm of the critical bottleneck size in vesicular stomatitis virus populations. J Virol. 2008 Dec;82(24):12589-90. DOI:10.1128/JVI.01394-08 |
7. Bull JJ and Wilke CO. Lethal mutagenesis of bacteria. Genetics. 2008 Oct;180(2):1061-70. DOI:10.1534/genetics.108.091413 |
8. Drummond DA and Wilke CO. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell. 2008 Jul 25;134(2):341-52. DOI:10.1016/j.cell.2008.05.042 |
9. Brunet E, Rouzine IM, and Wilke CO. The stochastic edge in adaptive evolution. Genetics. 2008 May;179(1):603-20. DOI:10.1534/genetics.107.079319 |
10. Whitehead DJ, Wilke CO, Vernazobres D, and Bornberg-Bauer E. The look-ahead effect of phenotypic mutations. Biol Direct. 2008 May 14;3:18. DOI:10.1186/1745-6150-3-18 |
11. Zhou T, Drummond DA, and Wilke CO. Contact density affects protein evolutionary rate from bacteria to animals. J Mol Evol. 2008 Apr;66(4):395-404. DOI:10.1007/s00239-008-9094-4 |
12. Sedaghat AR, Dinoso JB, Shen L, Wilke CO, and Siliciano RF. Decay dynamics of HIV-1 depend on the inhibited stages of the viral life cycle. Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4832-7. DOI:10.1073/pnas.0711372105 |
13. Dutta RN, Rouzine IM, Smith SD, Wilke CO, and Novella IS. Rapid adaptive amplification of preexisting variation in an RNA virus. J Virol. 2008 May;82(9):4354-62. DOI:10.1128/JVI.02446-07 |
14. Sedaghat AR, Siliciano RF, and Wilke CO. Low-level HIV-1 replication and the dynamics of the resting CD4+ T cell reservoir for HIV-1 in the setting of HAART. BMC Infect Dis. 2008 Jan 2;8:2. DOI:10.1186/1471-2334-8-2 |
15. Rouzine IM, Brunet E, and Wilke CO. The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation. Theor Popul Biol. 2008 Feb;73(1):24-46. DOI:10.1016/j.tpb.2007.10.004 |