Wilke:Tutorials: Difference between revisions
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=Tutorials= | |||
= | ==General== | ||
* [[Wilke:Editing openwetware.org|Editing pages on openwetware.org]] | |||
* [[Wilke:Using lab cluster|Using the lab cluster]] | |||
* [[Wilke:Creating figures|Creating publication-quality figures]] | * [[Wilke:Creating figures|Creating publication-quality figures]] | ||
* [[Wilke:Information theory|Information theory]] | * [[Wilke:Information theory|Information theory]] | ||
* [[Wilke:R Tutorial Videos|R tutorial videos]] | |||
* [[Wilke:Statistics errors|Common errors in statistical analyses]] | |||
==Genomics and Sequence Analysis== | |||
* [[Wilke:Using HyPhy|Notes on how to use HyPhy]] | |||
* [[Wilke:Molecular Evolution|Molecular Evolution: Alignment, Phylogeny, and Evolutionary Rate Analysis]] | |||
* [[Wilke:Parsing Genbank files with Biopython|Parsing with Biopython]] | * [[Wilke:Parsing Genbank files with Biopython|Parsing with Biopython]] | ||
* [[Wilke: | * [[Wilke:Accessing Eukaryote genome alignments| Downloaded gene alignments from ensembl via Pycogent]] | ||
* [http://www.zoology.ubc.ca/~schluter/zoo502stats/Rtips.phylogeny.html Tutorial on how to do independent contrasts by Dolph Schluter] | * [http://www.zoology.ubc.ca/~schluter/zoo502stats/Rtips.phylogeny.html Tutorial on how to do independent contrasts by Dolph Schluter] | ||
* [[Wilke: | |||
==Structural Biology== | |||
* [[Wilke:PDB Equilibration|Building an environment and equilibrating a PDB structure.]] | |||
* [[Wilke:Mutant Screening|Mutant screening via Steered Molecular Dynamics (SMD).]] | |||
* [[Wilke:ProDy|ProDy (python) for analysis of large MD trajectories.]] | |||
* [[Wilke:Bio3d|Bio3d (R) for analysis of large MD trajectories.]] | |||
* [[Wilke:ParseDSSP|DSSP parser script.]] | |||
Latest revision as of 11:46, 10 July 2013
Notice: The Wilke Lab page has moved to http://wilkelab.org.
The page you are looking at is kept for archival purposes and will not be further updated.
The page you are looking at is kept for archival purposes and will not be further updated.
THE WILKE LAB
Tutorials
General
- Editing pages on openwetware.org
- Using the lab cluster
- Creating publication-quality figures
- Information theory
- R tutorial videos
- Common errors in statistical analyses
Genomics and Sequence Analysis
- Notes on how to use HyPhy
- Molecular Evolution: Alignment, Phylogeny, and Evolutionary Rate Analysis
- Parsing with Biopython
- Downloaded gene alignments from ensembl via Pycogent
- Tutorial on how to do independent contrasts by Dolph Schluter
