Wittrup:Protocols: Difference between revisions

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===Buffers/Equipment/Media===
===General Lab Duties===


[[Wittrup:Buffers]]
[[Wittrup: Dishwashing]]


[[Wittrup:Yeast media]]
===Recipes===


===Assays===
[[Wittrup: Buffers]]


[[Wittrup: Yeast Media/Buffers]]
[[Wittrup: E. coli Media]]
===Equipment===
[[Wittrup:XL Flow cytometer]]
[[Wittrup:Deltavision deconvolution microscope]]


===DNA===
===DNA===


[[Wittrup:  Plasmid minipreps, restriction digestion]]
[[Wittrup:  Plasmid miniprep]]


[[Wittrup:  Gel electrophoresis and band purification]]
[[Wittrup:  Restriction digestion]]
 
[[Wittrup:  Gel electrophoresis]]
 
[[Wittrup:  Gel extraction]]


[[Wittrup:  Site directed mutagenesis by QuikChange]]
[[Wittrup:  Site directed mutagenesis by QuikChange]]
Line 18: Line 31:
[[Wittrup:  PCR]]
[[Wittrup:  PCR]]


===RNA===
[[Wittrup:  Yeast colony PCR]]


===Proteins===
===Proteins===
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[[Wittrup:His-Tag Proteins/Nickel Column Purification (suppliers, troubleshooting, etc.)]]
[[Wittrup:His-Tag Proteins/Nickel Column Purification (suppliers, troubleshooting, etc.)]]


[[Wittrup:FPLC general use]]
[[Wittrup: FPLC general use]]


[[Wittrup:SDS-PAGE]]
[[Wittrup: SDS-PAGE]]


[[Wittrup:ECL Western Blots and Phosphorimager]]
[[Wittrup: ECL Western Blots and Phosphorimager]]


[[Wittrup:Protein concentration by ultrafiltration]]
[[Wittrup: Protein concentration by ultrafiltration]]


[[Wittrup:  Protein conjugation with fluorophores]]
[[Wittrup:  Fluorescein Quench Titration Assay]]
[[Wittrup:  TCA Protein Precipitation]]
[[Wittrup:  TEV Protease Purification and Digestion]]


===Yeast Protocols===
===Yeast Protocols===
Line 44: Line 64:


[[Wittrup:  Yeast surface display]]
[[Wittrup:  Yeast surface display]]
[[Wittrup:  Cell Surface Secretion Assay]]
[[Wittrup:  Fluorescence Microscopy of Yeast]]
[[Wittrup:  Yeast Preps for Western Blotting]]


===Cell culture===
===Cell culture===


===Software===
[[Wittrup: New Cell Line Banking and Authentication]]
 
[[Wittrup: Basic Culture Media]]
 
[[Wittrup: Recovery Media]]
 
[[Wittrup: Freezing Media]]
 
[[Wittrup: Freezing Protocol]]
 
[[Wittrup: Subculturing Protocol]]
 
[[Wittrup: Thawing Protocol]]
 
[[Wittrup: Crystal Violet Toxicity Assay Protocol]]
 
[[Wittrup: HEK293-F Transfection]]
 
[[Wittrup: Mycoplasma Detection and Clearance]]
 
===Animal studies===
 
[[Wittrup:Immunohistochemistry of frozen sections]]
 
[[Wittrup:Immunohistochemistry of paraffin embedded sections]]
 
[[Wittrup:Immunofluorescence of frozen sections]]


[[Wittrup: Sequence alignment]]
[[Wittrup:Tumor dissociation]]


[[Wittrup: PCR primer design]]
[[Wittrup:Making a cell line from tumor sections]]


[[Wittrup:  Protein visualization (PyMOL)]]
===Individual Lab Member Protocols===


[[Wittrup: Biology Workbench]]
[[User: Cary F Opel]]

Revision as of 10:59, 16 August 2012

General Lab Duties

Wittrup: Dishwashing

Recipes

Wittrup: Buffers

Wittrup: Yeast Media/Buffers

Wittrup: E. coli Media

Equipment

Wittrup:XL Flow cytometer

Wittrup:Deltavision deconvolution microscope

DNA

Wittrup: Plasmid miniprep

Wittrup: Restriction digestion

Wittrup: Gel electrophoresis

Wittrup: Gel extraction

Wittrup: Site directed mutagenesis by QuikChange

Wittrup: PCR

Wittrup: Yeast colony PCR

Proteins

Wittrup: Determining Protein Concentration

Wittrup:His-Tag Proteins/Nickel Column Purification (suppliers, troubleshooting, etc.)

Wittrup: FPLC general use

Wittrup: SDS-PAGE

Wittrup: ECL Western Blots and Phosphorimager

Wittrup: Protein concentration by ultrafiltration

Wittrup: Protein conjugation with fluorophores

Wittrup: Fluorescein Quench Titration Assay

Wittrup: TCA Protein Precipitation

Wittrup: TEV Protease Purification and Digestion

Yeast Protocols

Wittrup: Yeast Transformation

Wittrup: Plasmid rescue from yeast

Wittrup: Yeast storage and revival

Wittrup: Yeast surface display

Wittrup: Cell Surface Secretion Assay

Wittrup: Fluorescence Microscopy of Yeast

Wittrup: Yeast Preps for Western Blotting

Cell culture

Wittrup: New Cell Line Banking and Authentication

Wittrup: Basic Culture Media

Wittrup: Recovery Media

Wittrup: Freezing Media

Wittrup: Freezing Protocol

Wittrup: Subculturing Protocol

Wittrup: Thawing Protocol

Wittrup: Crystal Violet Toxicity Assay Protocol

Wittrup: HEK293-F Transfection

Wittrup: Mycoplasma Detection and Clearance

Animal studies

Wittrup:Immunohistochemistry of frozen sections

Wittrup:Immunohistochemistry of paraffin embedded sections

Wittrup:Immunofluorescence of frozen sections

Wittrup:Tumor dissociation

Wittrup:Making a cell line from tumor sections

Individual Lab Member Protocols

User: Cary F Opel