Yu:Publications: Difference between revisions

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Moore, M.J., Schwartzfarb, E.M., Silver, P.A., and Yu, M.C. (2006) “Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing” '''''Mol. Cell.''''' 24(6):903-15
<biblio>
* Faculty of 1000 “Must Read” rating
#1 pmid=17189192
 
#2 pmid=17158743
Yu, M.C., Lamming, D.W., Eskin, J., Sinclair, D.A., and Silver, P.A. (2006) “The role of arginine methylation in the formation of silent chromatin” '''''Genes & Dev.''''' 20(23):3249-54
#3 pmid=17130867
 
#4 pmid=16753168
Tsankov, A., Brown, C.R., Yu, M.C., Win, M., Silver, P.A., and Casolari, J.M. (2006) “Communication between levels of transcriptional control improves robustness and adaptivity” ''''''Mol Syst Biol.''''' 2:65
#5 pmid=15314027
 
#6 pmid=15489286
Thomas, S., Yu, M.C., Sturm, N.R., and Campbell, D.A. (2006) “A non-universal transcription factor? the Leishmania tarentolae TATA box-binding protein LtTBP associates with a subset of promoters” '''''Int. J. Parasitol.'''''' 36(10-11):1217-26
#7 pmid=12350376
 
#8 pmid=10652494
Yu, M.C., Bachand, F., McBride, A.E., Komili, S., Casolari, J.M., and Silver, P.A. (2004) “Arginine methyltransferase affects interaction and recruitment of mRNA processing and export factors” '''''Genes & Dev.''''' 18(16):2024-35
#9 pmid=11163445
* Faculty of 1000 “Recommended” rating
#10 pmid=9891092
* See News and Views in Nature Structural &Molecular Biology, 2004
#11 pmid=9747976
 
#12 pmid=9671450
Hieronymus, H., Yu, M.C., and Silver, P.A. (2004) “mRNA surveillance is coupled to mRNA export” '''''Genes & Dev.''''' 18(21):2652-62
#13 pmid=7601836
 
</biblio>
Yu, M.C., Orlando, T.C., Sturm, N.R., Zhou, L., Saito, R.M., Floeter-Winter, L.M., and Campbell, D.A. (2002) “Two distinct functional spliced leader RNA gene arrays in Leishmania tarentolae are found in several lizard Leishmania species” '''''Int. J. Parasitol.''''' 32(11):1411-22
 
Campbell, D.A., Sturm, N.R., and Yu, M.C. (2000) “Transcription of the kinetoplastid spliced leader RNA gene: RNA polymerase II, III or other?” '''''Parasitol. Today''''' 16(2):78-82
 
Yu, M.C., Roberts, T.G., Sturm, N.R., and Campbell, D.A. (2000) “In vitro transcription of mutated Leishmania tarentolae spliced leader RNA genes approximates in vivo patterns” ''''''Mol. Bioch. Parasitol.''''' 111:391-9
 
Sturm, N.R., Yu, M.C., and Campbell, D.A. (1999) “Transcription termination and 3’-end processing of the spliced leader RNA in kinetoplastids” '''''Mol. Cell. Biol.''''' 19(2):1595-1604
 
Yu, M.C., Sturm, N.R., Saito, R.M., Roberts, T.G., and Campbell, D.A. (1998) “Single nucleotide resolution of promoter activity and protein binding for the Leishmania tarentolae spliced leader RNA gene” '''''Mol. Bioch. Parasitol.''''' 94:265-81
 
Roberts, T.G., Sturm, N.R., Yee, B., Yu, M.C., Hartshorne, T., Agabian, N., and Campbell, D.A. (1998) “Three small nucleolar RNAs identified from the spliced leader-associated RNA locus in kinetoplastid protozoa” ''''''Mol. Cell. Biol.''''' 18(8):4409-17
 
Cheng, Q., Yu, M.C., Reeves, A.R., and Salyers, A.A. (1995) “Identification and characterization of a Bacteroides gene, csuF, which encodes an outer membrane that is essential for growth on chondroitin sulfate” '''''J. Bacterol.''''' 177(13):3721-7

Revision as of 14:01, 6 June 2009

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  1. Moore MJ, Schwartzfarb EM, Silver PA, and Yu MC. Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing. Mol Cell. 2006 Dec 28;24(6):903-15. DOI:10.1016/j.molcel.2006.12.006 | PubMed ID:17189192 | HubMed [1]
  2. Yu MC, Lamming DW, Eskin JA, Sinclair DA, and Silver PA. The role of protein arginine methylation in the formation of silent chromatin. Genes Dev. 2006 Dec 1;20(23):3249-54. DOI:10.1101/gad.1495206 | PubMed ID:17158743 | HubMed [2]
  3. Tsankov AM, Brown CR, Yu MC, Win MZ, Silver PA, and Casolari JM. Communication between levels of transcriptional control improves robustness and adaptivity. Mol Syst Biol. 2006;2:65. DOI:10.1038/msb4100106 | PubMed ID:17130867 | HubMed [3]
  4. Thomas S, Yu MC, Sturm NR, and Campbell DA. A non-universal transcription factor? The Leishmania tarentolae TATA box-binding protein LtTBP associates with a subset of promoters. Int J Parasitol. 2006 Sep;36(10-11):1217-26. DOI:10.1016/j.ijpara.2006.04.004 | PubMed ID:16753168 | HubMed [4]
  5. Yu MC, Bachand F, McBride AE, Komili S, Casolari JM, and Silver PA. Arginine methyltransferase affects interactions and recruitment of mRNA processing and export factors. Genes Dev. 2004 Aug 15;18(16):2024-35. DOI:10.1101/gad.1223204 | PubMed ID:15314027 | HubMed [5]
  6. Hieronymus H, Yu MC, and Silver PA. Genome-wide mRNA surveillance is coupled to mRNA export. Genes Dev. 2004 Nov 1;18(21):2652-62. DOI:10.1101/gad.1241204 | PubMed ID:15489286 | HubMed [6]
  7. Yu MC, Orlando TC, Sturm NR, Zhou L, Saito RM, Floeter-Winter LM, and Campbell DA. Two distinct functional spliced leader RNA gene arrays in Leishmania tarentolae are found in several lizard Leishmania species. Int J Parasitol. 2002 Oct;32(11):1411-22. DOI:10.1016/s0020-7519(02)00131-5 | PubMed ID:12350376 | HubMed [7]
  8. Campbell DA, Sturm NR, and Yu MC. Transcription of the kinetoplastid spliced leader RNA gene. Parasitol Today. 2000 Feb;16(2):78-82. DOI:10.1016/s0169-4758(99)01545-8 | PubMed ID:10652494 | HubMed [8]
  9. Yu MC, Roberts TG, Sturm NR, and Campbell DA. In vitro transcription of mutated Leishmania tarentolae spliced leader RNA genes approximates in vivo patterns. Mol Biochem Parasitol. 2000 Dec;111(2):391-9. DOI:10.1016/s0166-6851(00)00332-7 | PubMed ID:11163445 | HubMed [9]
  10. Sturm NR, Yu MC, and Campbell DA. Transcription termination and 3'-End processing of the spliced leader RNA in kinetoplastids. Mol Cell Biol. 1999 Feb;19(2):1595-604. DOI:10.1128/MCB.19.2.1595 | PubMed ID:9891092 | HubMed [10]
  11. Yu MC, Sturm NR, Saito RM, Roberts TG, and Campbell DA. Single nucleotide resolution of promoter activity and protein binding for the Leishmania tarentolae spliced leader RNA gene. Mol Biochem Parasitol. 1998 Aug 1;94(2):265-81. DOI:10.1016/s0166-6851(98)00083-8 | PubMed ID:9747976 | HubMed [11]
  12. Roberts TG, Sturm NR, Yee BK, Yu MC, Hartshorne T, Agabian N, and Campbell DA. Three small nucleolar RNAs identified from the spliced leader-associated RNA locus in kinetoplastid protozoans. Mol Cell Biol. 1998 Aug;18(8):4409-17. DOI:10.1128/MCB.18.8.4409 | PubMed ID:9671450 | HubMed [12]
  13. Cheng Q, Yu MC, Reeves AR, and Salyers AA. Identification and characterization of a Bacteroides gene, csuF, which encodes an outer membrane protein that is essential for growth on chondroitin sulfate. J Bacteriol. 1995 Jul;177(13):3721-7. DOI:10.1128/jb.177.13.3721-3727.1995 | PubMed ID:7601836 | HubMed [13]

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