Zrusso Biol 368 week 12: Difference between revisions
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===Master Spreadsheet=== | |||
*[[Media:Alex_Robert_Zeb_MasterSpreadSheet_20111130_CA.xls|Master Spread Sheet]] | |||
===Uploaded Data=== | ===Uploaded Data=== | ||
====Experiment E-BUG Data==== | ====Experiment E-BUG Data==== | ||
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*[[Media:A-BUGS-17.README.txt | ReadMe]] | *[[Media:A-BUGS-17.README.txt | ReadMe]] | ||
*[[Media:A-BUGS-17.adf.xls | ADF]] | *[[Media:A-BUGS-17.adf.xls | ADF]] | ||
===Week 12 Assignment=== | ===Week 12 Assignment=== | ||
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*Spreadsheet can be found [[Media:MasterSpreadsheet.xls | here]]. | *Spreadsheet can be found [[Media:MasterSpreadsheet.xls | here]]. | ||
[[Media:JournalClubFinal.pptx | [[Media:JournalClubFinal.pptx]] | ||
{{Zrusso Biol 368}} | {{Zrusso Biol 368}} |
Latest revision as of 11:09, 30 November 2011
Master Spreadsheet
Uploaded Data
Experiment E-BUG Data
Array Data
Week 12 Assignment
- What samples did they collect and use for the microarray experiment?
- 3 replicates of control culture and ranalexin were used in the microarray experiment. 6 total arrays were used in analysis.
- How many microarray chips did they hybridize in the experiment?
- 2 microarray chips were used.
- Which samples were paired to hybridize on the chip?
- Ranalexin (A1) and MRSA-252(A2). MRSA-252(A1) and Ranalexin(A2).
- Which was labeled red (Cy5)? Which was labeled green (Cy3)?
- Ranalexin (A1) and MRSA-252(A2) was labeled red (Cy5). Ranalexin (A2) and MRSA-252(A1) was labeled green (Cy3).
- How many replicates did they perform of each type?
- 2 technical replicates of each type.
- Arrary data file names
- Ranalexin (A1) - MBAD_12054.txt
- Ranalexin (A2) - MBAD_12061.txt
- MRSA-252 (A1) - MBAD_12055.txt
- MRSA-252 (A2) - MBAD_12060.txt
Spreadsheet
- Spreadsheet can be found here.