Zrusso Biol 368 week 14: Difference between revisions
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==Electronic Notebook== | |||
I used the .txt file that Alex and Bobby created last week in class and ran my own runs of GenMAPP and MAPPFinder to correlate our answers and I received the same results that they did for increased and decreased GO Terms as well as the most significant genes as determined by the genes with with lowest P-values. my data can be found in the .zip file at the bottom of the page titled 'ZR MRSA' | |||
===Increased GO Terms=== | |||
*#amine biosynthetic process | |||
*#cellular amino acid biosynthetic process | |||
*#cellular nitrogen compound biosynthetic process | |||
*#antiport activity | |||
*#branched chain family amino acid metabolic process | |||
*#aspartate family amino acid metabolic process | |||
*#threonine metabolic process | |||
*#oxidation reduction | |||
*#vitamin binding | |||
*#oxidoreductace activity | |||
===Decreased GO Terms=== | |||
*#pathogenesis | |||
*#multi-organism process | |||
*#external encapsulating structure | |||
*#high-affinity iron ion transport | |||
*#extracellular region | |||
*#membrane part | |||
*#protein complex binding | |||
*#immunoglobin binding | |||
*#respiratory chain | |||
*#periplasmic space | |||
===Most Significant Genes=== | ===Most Significant Genes=== | ||
SAR0633 - Q6GJ44 UniProt - Putative antiporter subunit mnhD2 | SAR0633 - Q6GJ44 UniProt - Putative antiporter subunit mnhD2 INCREASE | ||
SAR1409 - Q6GH11 UniProt - Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate. INCREASED | SAR1409 - Q6GH11 UniProt - Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate. INCREASED | ||
| Line 18: | Line 45: | ||
SAR0820 - Q6GIM6 UniProt - Displays ATPase and GTPase activities. INCREASED | SAR0820 - Q6GIM6 UniProt - Displays ATPase and GTPase activities. INCREASED | ||
SAR0353 - Q6GJW2 UniProt - Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation. | SAR0353 - Q6GJW2 UniProt - Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation. INCREASED | ||
[[Media:ZR_MRSA.zip]] | [[Media:ZR_MRSA.zip]] | ||
Powerpoint can be found [[Media:FinalPowerpointACnew.ppt | here]] | |||
{{Zrusso Biol 368}} | {{Zrusso Biol 368}} | ||
Latest revision as of 23:29, 6 December 2011
Electronic Notebook
I used the .txt file that Alex and Bobby created last week in class and ran my own runs of GenMAPP and MAPPFinder to correlate our answers and I received the same results that they did for increased and decreased GO Terms as well as the most significant genes as determined by the genes with with lowest P-values. my data can be found in the .zip file at the bottom of the page titled 'ZR MRSA'
Increased GO Terms
- amine biosynthetic process
- cellular amino acid biosynthetic process
- cellular nitrogen compound biosynthetic process
- antiport activity
- branched chain family amino acid metabolic process
- aspartate family amino acid metabolic process
- threonine metabolic process
- oxidation reduction
- vitamin binding
- oxidoreductace activity
Decreased GO Terms
- pathogenesis
- multi-organism process
- external encapsulating structure
- high-affinity iron ion transport
- extracellular region
- membrane part
- protein complex binding
- immunoglobin binding
- respiratory chain
- periplasmic space
Most Significant Genes
SAR0633 - Q6GJ44 UniProt - Putative antiporter subunit mnhD2 INCREASE
SAR1409 - Q6GH11 UniProt - Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate. INCREASED
SAR2697 - Q6GDI4 UniProt - No other info INCREASED
SAR2146 - Q6GF14 UniProt - Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate INCREASED
SAR0689 - pseudogene
SAR2771 - hypothetical protein
SAR0278 - hypothetical protein
SAR1563 - pseudogene
SAR0820 - Q6GIM6 UniProt - Displays ATPase and GTPase activities. INCREASED
SAR0353 - Q6GJW2 UniProt - Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation. INCREASED
Powerpoint can be found here
