AhmadWeek14
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Steps for data manipulation
- The first thing I did was change the file name to one that was specific to me
- I am using the genes that are in my Regulation Matrix
- For the 'network' sheets, I copied and pasted in my transposed Regulation Matrix data
- I put the genes in alphabetical order to make it easier on myself
- Because I am working with wildtype data, I did not have to delete anything from the file
- I used the 'degradation rates' excel file to look up the degradation rates for each of my genes
- I also used this same sheet to find the systematic name for many of my genes
- YEASTRACT was used for a few genes that were not in the degradation excel file
- The degradation rates were all multiplied by two and then pasted into the production rates table
- The data I had from the Week 9 assignment was used to find the average log fold changes for all of the genes
- I had to create new columns to find the standard deviations in the Week 9 data because they were not included
- Once the columns were made for standard deviations of times 15, 30, and 60, they were copied into the 'concentration sigmas' sheet
- I changed the simulation times to go to 60 from 0 at 5 second increments in 'simulation_times'
- In 'network_b', I put all of the genes in and made the threshold 0.000 for all of them
- The file was then uploaded to Lionshare
Assignments
- Class Journal Week 1
- Journal Assignment Week 2
- Class Journal Week 2
- Journal Assignment Week 3
- Class Journal Week 3
- Journal Assignment Week 4
- Class Journal Week 4
- Journal Assignment Week 5
- Class Journal Week 5
- Journal Assignment Week 6
- Class Journal Week 6
- Journal Assignment Week 8
- Class Journal Week 8
- Journal Assignment Week 9
- Class Journal Week 9
- Journal Assignment Week 11
- Class Journal Week 11
- Journal Assignment Week 12
- Class Journal Week 12
- Journal Assignment Week 13
- Class Journal Week 13
- Assignment Week 13
- Journal Assignment Week 14
- Class Journal Week 14
- Assignment Week 14