Cfrench:hemanalysis1

From OpenWetWare

Jump to: navigation, search

Contents

Analysis of short chain bacteriohemerythrins

Alpha Proteobacteria

StrainLocus TagLengthCodeGroup
Magnetococcus sp. MC-1Mmc1_1179124Magco124bp-1?
Mmc1_2231123Magco134-
Mmc1_3235174Magco174-
Mmc1_3358160Magco160-
Magnetospirillum gryphiswaldense MSR1mgI449159Maggr159ap-1a
mgI478, ORF13150 or 149Maggr150ap-1b
Magnetospirillum magneticum AMB-1amb0226135Magam135ap-1d
amb0520122Magam122ap-7
amb0569129Magam129ap-1f
amb0737146Magam146ap-6
amb0935157Magam157ap-1b
amb0985171Magam171aap-1a
amb1378169Magam169ap-4
amb1415132Magam132ap-1e
amb1549134Magam134ap-1g
amb2239142Magam142ap-5a
amb2249143Magam143ap-8
amb2654140Magam140aap-5b
amb2739179Magam179ap-3b
amb2800171Magam171bap-2b
amb3091147Magam147ap-3a
amb3835156Magam156ap-1c
amb3966148Magam148ap-4a
amb4136140Magam140bap-2e?
amb4171138Magam138ap-2c
amb4265144Magam144ap-2a
amb4296136Magam136ap-4
amb4401161Magam161ap-2d
Magnetospirillum magnetotacticum MS-1Magn03005600134Magms134aap-1g
Magn03007081150Magms150ap-3b
Magn03007233140Magms140ap-5b
Magn03007342114Magms114ap-1c
Magn03007440135Magms135aap-5a
Magn03007701159Magms159ap-1a
Magn03007822120Magms120aap-8
Magn03008338127Magms127-
Magn03008342132Magms132ap-1e
Magn03008958139Magms139ap-3a
Magn03008494120Magms120bap-7
Magn03008990134Magms134bap-6
Magn03009649122Magms122-
Magn03009746144Magms144a-
Magn03009911136Magms136ap-2c
Magn03010109131Magms131-
Magn03010161144Magms144bap-2a
Magn03010652146Magms146ap-4a
Magn03010772158Magms158-
Magn03010975135Magms135bap-1d
Magn03011053129Magms129ap-1f
Mesorhizobium sp. BNC1Meso_4300134Mesbn134-
Rhodospirillum rubrum ATCC 11170Rru_A1655148Rhoru148ap-1
Rru_A3211176Rhoru176ap-2
Rru_A2082209Rhoru209ap-3

Beta Proteobacteria

StrainLocus TagLengthCodeGroup
Acidovorax avenae AAC00-1AAveDRAFT_4356171Aciav171bp-1b
Acidovorax sp. JS42AjsDRAFT_4228168Acijs168bp-1b
AjsDRAFT_3609180Acijs180X
Bordetella avium 197NBAV0601148Borav148bp-2a
Burkholderia mallei ATCC23344BMA0605149Burma149bp-1a
Burkholderia mallei GB8 horse 4BmalG_01002260149Burma149bp-1a
Burkholderia mallei FMHBmalF_02000813149Burma149bp-1a
Burkholderia mallei JHUBmalJ_02001239149Burma149bp-1a
Burkholderia mallei SAVP1BmalS_02000673149Burma149bp-1a
Burkholderia mallei 10229Bmal1_02002528149Burma149bp-1a
Burkholderia mallei 2002721280Bmal2_03002101149Burma149bp-1a
Burkholderia mallei 10399Bmal10_03003258149Burma149bp-1a
Burkholderia mallei NCTC 10247BmalN_01003861145Burmp145bp-1a
Burkholderia phymatum STM815BphyDRAFT_6431147Burph147bp-2b
Burkholderia pseudomallei 668Bpse6_01003104145Burmp145bp-1a
Burkholderia pseudomallei 1106bBpse110_02002465145Burmp145bp-1a
Burkholderia pseudomallei 1655Bpse1_03002047145Burmp145bp-1a
Burkholderia pseudomallei PasteurBpseP_03004124145Burmp145bp-1a
Burkholderia pseudomallei 406eBpse4_03003105145Burmp145bp-1a
Burkholderia pseudomallei 1106aBpse11_03001529145Burmp145bp-1a
Burkholderia pseudomallei 1710bBURPS1710b_2831186 (141)Burps141bp-1a
Burkholderia pseudomallei K96243BPSL2377141Burps141bp-1a
Burkholderia pseudomallei 1710aBpse17_02004690141Burps141bp-1a
Burkholderia pseudomallei S13BpseS_03004721141Burps141bp-1a
Burkholderia thailandensis E264BTH_I1789141Burth141bp-1a
Burkholderia vietnamiensis G4Bcep1808DRAFT_0731158Burvi158bp-2a
Burkholderia xenovorans LB400Bxe_C0962159Burxe159bp-2b
Bxe_C0584165Burxe165bp-2b
Bxe_A3521166Burxe166bp-2a
Comamonas testosteroni KF-1CtesDRAFT_1489179(159)Comte159bp-3
CtesDRAFT_1954211Comte211gp-1
CtesDRAFT_3164165Comte165abp-2a
CtesDRAFT_4167165Comte165bbp-1b
Delftia acidovorans SPH-1DaciDRAFT_3784166Delac166bp-1b
DaciDRAFT_5656213Delac213gp-1
Janthinobacterium lividum BR(none)132Janli132bp-?
Janthinobacterium sp. J3ORF33149Jansp149bp-2b
Polaromonas naphthalenivorans CJ2PnapDRAFT_2309152Polna152bp-2a
PnapDRAFT_2635168Polna168bp-1b
PnapDRAFT_4966155Polna155bp-3
Ralstonia eutropha H16H16_A2797146RaleuH146bp-1a
Ralstonia eutropha JMP134Reut_A0820157RaleuJ157bp-1a
Ralstonia metallidurans CH34Rmet_2637160Ralme160bp-1a
Ralstonia solanacearum GMI1000RSc0777137RalsoG137bp-1a
Ralstonia solanacearum UW551RRSL_01522137RalsoU137bp-1a
Verminephrobacter eiseniae EF01-2VeisDRAFT_1888168Verei168bp-2a?
Dechloromonas aromatica RCBDaro_1333161Decar161bp-?
Daro_1406134Decar134X
Daro_1420125Decar125bp-?
Daro_1617160Decar160gp-1
Daro_1660128Decar128X
Daro_2268108?Decar108X
Daro_2762146Decar146bp-2b
Daro_3696142Decar142X

Gamma Proteobacteria

StrainLocus TagLengthCodeGroup
Alcanivorax borkumensis SK2ABO_0064154Alcbo154gp-1
Alkalilimnicola ehrlichei MLHE-1Mlg_0407161Alkeh161gp-1
Azotobacter vinelandii AvOPAvinDRAFT_4714134Azovi134bp-?
Colwellia psychrerythraea 34HCPS_1745131Colps131gp-2?
CPS_4221188Colps188gp-2
CPS_4236192Colps192gp-2
marine gamma proteobacterium HTCC2207GB2207_10903174Unkga174gp-3
Methylococcus capsulatus BathMCA0715131Metca131-
Oceanospirillum sp. MED92MED92_09166121Oceme121-
MED92_10439129Oceme129-
MED92_11109135Oceme135gp-3
Pseudomonas aeruginosa PAO1PA1673153Pseae153gp-1
Pseudomonas aeruginosa C3719PaerC_01000653153Pseae153gp-1
Pseudomonas aeruginosa 2192Paer2_01000661153Pseae153gp-1
Pseudomonas aeruginosa PACS2PaerPA_01002136153Pseae153gp-1
Pseudomonas aeruginosa UCBPP-PA14PA14_42860153Pseae153gp-1
Pseudomonas aeruginosa PA7PaerP_01003615153Pseae153gp-1
Pseudomonas resinovorans plasmidORF33146 or 165Psere146bp-2b
Reinekea sp. MED297MED297_01480150Reime150gp-1
MED297_01485151Reime151gp-1
Shewanella woodyi ATCC 51908SwooDRAFT_2326159Shewo159-
Xanthomonas axonopodis 306XAC2483153Xanax153gp-1
Xanthomonas campestris 8004XC_1765153XancaX153gp-1
Xanthomonas campestris 85-10XCV2661153XancaY153gp-1
Xanthomonas campestris ATCC 33913XCC2351153XancaA153gp-1

Delta Proteobacteria

StrainLocus TagLengthCodeGroup
StrainLocus TagLengthCodeGroup
Anaeromyxobacter dehalogenans 2CP-CAdeh_0092146Anade146dp-2b
Adeh_0219138Anade138dp-2b
Adeh_0383147Anade147gp-3?
Adeh_0492144Anade144a-
Adeh_0575144Anade144bdp-2b?
Adeh_3016133Anade133adp-2b
Adeh_3017133Anade133bdp-2b
Adeh_4100133Anade133cdp-2b
Bdellovibrio bacteriovorus HD100Bd3532136Bdeba136-
Desulfotalea psychrophila LSv54DP1787156Desps156-
Desulfovibrio desulfuricans G20Dde_0253150Desde150dp-4
Desulfovibrio vulgaris DP4DvulDRAFT_0258137DesvuD137dp-4
Desulfovibrio vulgaris HildenboroughDVU3049137DesvuH137dp-4
Desulfuromonas acetoxidans DSM 684Dace_1122142Desac142dp-4?
Dace_1123199Desac199dp-3?
Dace_1813133Desac133dp-3
Dace_1814132Desac132bdp-3
Dace_2627132Desac132adp-3
Geobacter metallireducens GS-15Gmet_0834155Geome155dp-2a
Gmet_3121135Geome135dp-1
Geobacter sp. FRC-32GeobDRAFT_0045132Geofr132dp-3
GeobDRAFT_2959135Geofr135dp-1
Geobacter sulfurreducens PCAGSU0256145Geosu145-
GSU0402135Geosu135dp-1
GSU1042134Geosu134dp-2a
GSU2635139Geosu139dp-2a
GSU2929131Geosu131dp-2a
Geobacter uraniumreducens Rf4GuraDRAFT_0025135Geour135dp-1
GuraDRAFT_3613138Geour138dp-2a
Delta Protebacterium MLMS-1MldDRAFT_0394135Mlmso135dp-1
MldDRAFT_0514,
MldDRAFT_2412148 or
149Mlmso148dp-1
Pelobacter carbinolicus DSM 2380Pcar_0508135Pelca135dp-1
Pelobacter propionicus DSM 2379PproDRAFT_0319138Pelpr138dp-2a
PproDRAFT_1345143Pelpr143dp-3

Epsilon Proteobacteria

StrainLocus TagLengthCodeGroup
Campylobacter coli RM2228CCO0085268Camco268ep-1
CCO0211112 (200)Camco200ep-4
CCO0213, CCO021294, 120 (210)Camco210ep-5
CCO0127203Camco203ep-4
CCO0128229Camco229ep-5
CCO1302199Camco199ep-3
C. fetus 82-40CFF8240_1699183Camfe183ep-?
C. jejuni jejuni NCTC 11168Cj0045c240CamjeN240ep-1
Cj0241c133CamjeN133ep-2
Cj1224199CamjeN199ep-3
C. jejuni RM1221CJE0044254CamjeR254ep-1
CJE1359199CamjeR199ep-3
C. jejuni jejuni CF93-6CJJCF936_0070241CamjeC241ep-1
CJJCF936_0096, CJJCF936_009579, 116 (188)CamjeC188ep-4b
CJJCF936_0259133CamjeC133ep-2
CJJCF936_1308199CamjeC199ep-3
C. jejuni jejuni HB93-13CJJHB9313_0064239CamjeH239ep-1
CJJHB9313_0090, CJJHB9313_008979, 116 (188)CamjeH188ep-4b
CJJHB9313_0250133CamjeH133ep-2
CJJHB9313_1232199CamjeH199ep-3
C. jejuni jejuni 81-176CJJ81176_0083144CamjeE144ep-1
CJJ81176_0109, CJJ81176_010979, 116 (188)CamjeE188ep-4b
CJJ81176_0266133CamjeE133ep-2
CJJ81176_1237199CamjeE199ep-3
C. jejuni jejuni 84-25CJJ8425_0078239CamjeF239ep-1
CJJ8425_0103, CJJ8425_010279, 116 (188)CamjeF188ep-4b
CJJ8425_0194133CamjeF133ep-2
CJJ8425_1247199CamjeF199ep-3
C. jejuni jejuni 260.94CJJ26094_0077254CamjeX254ep-1
CJJ26094_0094202CamjeX202ep-4
CJJ26094_0096, CJJ26094_009596, 126 (214)CamjeX214ep-5
CJJ26094_0259133CamjeX133ep-2
CJJ26094_1282199CamjeX199ep-3
C. jejuni doylei 269.97Cjejd_01001230131CamjeY131ep-2
Cjejd_0100133453 (?)CamjeY53(ep-4b)
Cjejd_01001357240CamjeY240ep-1
C. lari RM2100CLA148298 (194)Camla194ep-?
CLA1484187Camla187ep-?
C. upsaliensis RM3195CUP0593199Camup199ep-3
CUP0688202Camup202ep-4
CUP0689217Camup217ep-5
CUP1319233Camup233ep-1
CUP1540106Camup106ep-2
Helicobacter hepaticus ATCC 51449HH0004184Helhe184ep-?
HH0005187Helhe187ep-?
Wolinella succinogenes DSM 1740WS1527168Wolsu168ep-?

Gram Positive Bacteria

StrainLocus TagLengthCodeGroup
Alkaliphilus metalliredigenes QYMFAmetDRAFT_1910137Alkme137cl-1b
Caldocellulosiruptor saccharolyticus DSM 8903CsacDRAFT_0685138Calsa138cl-2?
Clostridium acetobutylicum ATCC 824CAC0069129Cloac129cl-1a
Clostridium beijerinckii NCIMB 8052CbeiDRAFT_0566129Clobe129acl-1a
CbeiDRAFT_1664130Clobe130cl-1a
CbeiDRAFT_1829129Clobe129bcl-1a
CbeiDRAFT_2542185 (136)Clobe136cl-3
CbeiDRAFT_2544135Clobe135cl-3
CbeiDRAFT_3403133Clobe133cl-3
Clostridium sp. OhILAsClosDRAFT_0906131Clooh131cl-3?
ClosDRAFT_1177142Clooh142cl-2
ClosDRAFT_1393137Clooh137cl-1b
Clostridium phytofermentans ISDgCphyDRAFT_1318143Cloph143cl-1?
CphyDRAFT_1890129Cloph129cl-1a
Clostridium tetani E88CTC02359137Clote137cl-1b
Clostridium thermocellum ATCC 27405CtheDRAFT_2261129Cloth129cl-1a
CtheDRAFT_3296140Cloth140cl-2
Desulfitobacterium hafniense DCB-2Dhaf_1230135DeshaD135cl-1a
Dhaf_3846139DeshaD139cl-2
Desulfitobacterium hafniense Y51DSY0238144DeshaY144cl-1a
DSY1174139DeshaY139cl-2
Syntrophomonas wolfei GoettingenSwol_2168130Synwo130cl-1a
Thermoanaerobacter tengcongensis MB4TTE0259133Thete133-
Symbiobacterium thermophilum IAM 14863STH1393147Symth147cl-3?

Other Prokaryotes

StrainLocus TagLengthCodeGroup
Acidobacteria Ellin345Acid345_3649155Aciel155Acidobacteria
Acid345_3650132Aciel132
Acid345_3651152Aciel152
Acid345_4443134Aciel134
Solibacter usitatus Ellin6076Acid_2398141Solus141
Acid_5150166Solus166
Acid_5914133Solus133"
Thermosynechococcus elongatus BP-1tlr1372149Theel149Cyanobacteria
tlr1993136Theel136"
Aquifex aeolicus VF5aq_1719131Aquae131Aquificae
Hydrogenobacter thermophilus-131Hydth131Aquificae
Kuenenia stuttgartensiskustc1183129Kuest129Planctomycetes
Treponema denticola ATCC 35405TDE1013Spirochaetes
TDE1302
Methanocaldococcus jannaschii DSM 2661MJ0747147 or 169Metja147Archaea
Methanospirillum hungatei JF-1Mhun_0966135Methu135aArchaea
Mhun_2752135Methu135b

Back to hemerythrin top page

Personal tools