Cfrench:multidomhem

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Analysis of multi-domain proteins with putative hemerythrin-like domains

Our analysis showed a variety of large multi-domain proteins with a hemerythrin-like domain, usually at the C-terminus or N-terminus. Other domains present were generally identified by sequence comparison as being involved in signalling: mainly methyl-accepting chemotaxis proteins (MCPs), diguanylate cyclases (GGDEF domains), histidine kinase domains, CheY-like response receiver domains, and cAMP-binding domains, and in one case an apparent phosphatase domain. The most obvious interpretation is that the hemerythrin domains act as oxygen sensors, and the auxiliary domains function in signal transduction to alter the cell's state. Sequence comparisons allowed the majority of the putative multi-domain hemerythrins to be assigned to a few well defined families.

Multi-Domain Hemerythrins

StrainLocus TagLengthCodeGroup
Magnetococcus sp. MC-1Mmc1_01941032Magco1032MCP-hem-2
Mmc1_0310994Magco994MCP-hem-2
Mmc1_0400320Magco320RR-hem
Mmc1_0606779Magco779MCP-hem-2
Mmc1_1585997Magco997MCP-hem-2
Mmc1_2454871Magco871CNBP-hem
Mmc1_2834249Magco249hem-X1
Mmc1_2935941magco941MCP-hem-2
Mmc1_3109253Magco253hem-X1
Mmc1_3168926Magco926MCP-hem-2
Mmc1_3573927Magco927MCP-hem-2
Magnetospirillum magneticum AMB-1amb0220807Magam807MCP-hem-1
amb0723275Magam275hem-RR
amb0871502Magam502hem-X2
amb1682906Magam906CNBP-hem
amb2535282Magam282hem-RR
amb3095870Magam870CNBP-hem
amb3267665Magam665MCP-hem-1
amb3610499Magam499hem-X2
amb3793810Magam810MCP-hem-1
amb4156795Magam795MCP-hem-1
Magnetospirillum gryphiswaldense MSR1mgI476, ORF12524 or 525Maggr524RR-hem-X3
Magnetospirillum magnetotacticum MS-1Magn03008576272Magms272hem-RR
Magn03008774274Magms274hem-RR
Magn03008962870Magms870CNBP-hem
Magn03008983500Magms500hem-X2
Magn03010318889Magms889CNBP-hem
Magn03010618808Magms808MCP-hem-1
Magn03010970807Magms807MCP-hem-1
Magn03011185699Magms699MCP-hem-1
Rhodospirillum rubrum ATCC 11170Rru_A0632736Rhoru736MCP-hem-1
Rru_A1523262Rhoru262hem-hem
Rhodopseudomonas palustris BisA53RPE_2062507RhopaA507GGDEF-hem
Rhodopseudomonas palustris BisB18RPC_2156470RhopaB470hem-GGDEF
Rhodopseudomonas palustris CGA009RPA1642504RhopaC504GGDEF-hem
Dechloromonas aromatica RCBDaro_0965681Decar681hem-HK
Daro_3954667Decar667GGDEF-hem
Rhodoferax ferrireducens DSM 15236/T118Rfer_1451277Rhofe277X4-hem
Rfer_3626840Rhofe840GGDEF-hem
Rfer_4030498Rhofe498GGDEF-hem
Aeromonas hydrophila ATCC 7966AHA_0130678Aerhy678MCP-hem-3
AHA_2968809Aerhy809GGDEF-hem
Colwellia psychrerythraea 34HCPS_1744368Colps368hem-GGDEF
CPS_19391328Colps1328HK-RR-hem
CPS_3631722Colps722hem-GGDEF
CPS_4695519Colps519RR-hem
Idiomarina baltica OS145OS145_02680566Idiba566MCP-hem-3
Idiomarina lohoiensis L2TRIL0175832Idilo832MCP-hem-3
Marinobacter aquaeoli VT8MaquDRAFT_0582662Maraq662hem-GGDEF
Shewanella amazonensis SB2BSamaDRAFT_0036518Sheam518MCP-hem-3
Shewanella sp. ANA-3Shewana3_0739529Shean529MCP-hem-3
Shewanella baltica OS155SbalDRAFT_2075529ShebaA529MCP-hem-3
Shewanella baltica OS195Sbal195DRAFT_1213529ShebaB529MCP-hem-3
Shewanella sp. MR-4Shewmr4_3223529Shemrf529MCP-hem-3
Shewanella sp. MR-7Shewmr7_0766529Shemrs529MCP-hem-3
Shewanella oneidensis MR-1SO3890529Sheon529MCP-hem-3
Shewanella putrefaciens CN-32Sputcn32DRAFT_3878526Shepu526MCP-hem-3
Shewanella sp. PV-4ShewDRAFT_3107526Shepv536MCP-hem-3
Shewanella sp. W3-18-1Sputw3181DRAFT_1600526Shewt526MCP-hem-3
Vibrio cholerae O1 N16961VC1216372Vibco372hem-GGDEF
Vibrio cholerae V52VchoV_01003238372Vibco372hem-GGDEF
Vibrio cholerae O395VchoO_01000773372Vibco372hem-GGDEF
Vibrio cholerae MO10VchoM_02002571372Vibco372hem-GGDEF
Vibrio parahaemolyticus RIMD 2210633VP1289381Vibpa381hem-GGDEF
Vibrio splendidus 12B01V12B01_04093383Vibsp383hem-GGDEF
Vibrio vulnificus CMCP6VV1_2369371VibvuC371hem-GGDEF
Vibrio vulnificus YJ016VV1972371VibvuY371hem-GGDEF
Desulfotalea psychrophila LSv54DP0972370Desps370hem-GGDEF
DP2039374Desps374hem-GGDEF
Desulfovibrio vulgaris DP4DvulDRAFT_2548963DesvuD963MCP-hem-4
DvulDRAFT_2859689DesvuD689MCP-hem-4
DvulDRAFT_3043659DesvuD659GGDEF-hem
Desulfovibrio vulgaris HildenboroughDVU0170689DesvuH689MCP-hem-4
DVU3106655DesvuH655GGDEF-hem
DVU3155, DcrH963 or 959DesvuH963MCP-hem-4
Desulfuromonas acetoxidans DSM 684Dace_03781174Desac1174GGDEF-hem
Dace_0592368Desac368hem-GGDEF
Dace_0947591Desac591hem-HK-RR
Dace_1299371Desac371hem-GGDEF
Delta proteobacterium MLMS-1MldDRAFT_3301, MldDRAFT_2276457Mlmso457phos-hem?
Pelobacter propionicus DSM 2379PproDRAFT_0329518Pelpr518MCP-hem-4
Campylobacter fetus 82-40CFF8240_0606385Camfe385hem-GGDEF
Thiomicrospira denitrificans ATCC 33889Tmden_09671004Thide1004hem-GGDEF-EAL
Mariprofundus ferrooxydans PV-1SPV1_05088373Marfe373hem-GGDEF
Kuenenia stuttgartensiskustc1183872Kuest872CNBP-hem
Haloarcula marismortui ATCC 43049pNG7265617Halma617hem-CoA-ligase?

MCP = methyl-accepting chemotaxis receptor CNBP = cyclic nucleotide binding protein GGDEF = cyclic di-GMP synthase HK = histidine kinase RR = CheY-like receiver domain phos = phosphatase X = unknown

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