Etchevers:Notebook/STRA6 in eye development/2009/08/03

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Actually done on August 1st

Made a proper organization of new Dell in Paris lab. Installed Ubuntu from a live DVD just in case; this has more drivers on it, so will reconstitute what is necessary if need to reinstall. Have a dual boot but if choose XP it goes back to the former dual boot with Ubuntu that had been nested inside XP - fix that later.

Also compiled FindPeaks.

heather@embryo:~/trunk$ ant fpsuite
Buildfile: build.xml

cleanfp:
initfp: [mkdir] Created dir: /home/heather/trunk/jars/fp4
compile: [javac] Compiling 138 source files to /home/heather/trunk/classes
FindPeaks: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/FindPeaks.jar [delete] Deleting directory /home/heather/trunk/tmp
SeparateReads: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/SeparateReads.jar [delete] Deleting directory /home/heather/trunk/tmp
SortFiles: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/SortFiles.jar [delete] Deleting directory /home/heather/trunk/tmp
GenomeViewer: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/AlignSlice.jar [delete] Deleting directory /home/heather/trunk/tmp
ConvertToBed: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/ConvertToBed.jar [delete] Deleting directory /home/heather/trunk/tmp
MaqPetToBed: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/MaqPetToBed.jar [delete] Deleting directory /home/heather/trunk/tmp
BowtieToBedFormat: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/BowtieToBedFormat.jar [delete] Deleting directory /home/heather/trunk/tmp
buildfp:

fptestdata: [copy] Copying 1 file to /home/heather/trunk/jars/fp4
changelog: [copy] Copying 1 file to /home/heather/trunk/jars
fpsuite:
BUILD SUCCESSFUL
Total time: 5 seconds
heather@embryo:~/trunk$

  • Heather 13:07, 1 August 2009 (EDT):
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