Jimenez-gomez lab:Publications

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Institute Jean Pierre Bourgin
INRA - Versailles
Route de Saint Cyr
78026 Versailles Cedex
France
Tel: +33 1 30 83 33 16
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2017

  • S Soyk, NA Müller, SJ Park, I Schmalenbach, Ke Jiang, Ryosuke Hayama, Lei Zhang, Joyce Van Eck, JM Jiménez-Gómez, Zachary B Lippman."Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato". Nature Genetics (2017) [link]

  • GU Balcke, S Bennewitz, N Bergau, B Athmer, A Henning, P Majovsky, JM Jiménez-Gómez, W Hoehenwarter, A Tissier. “Multiomics of tomato glandular trichomes reveals distinct features of central carbon metabolism supporting high productivity of specialized metabolites”. The Plant Cell (2017) [link]

  • MC Costa, MA Artur , J Maia , E Jonkheer , M Derks , H Nijveen , B Williams , S Mundree , JM Jiménez-Gómez , T Hesselink , E Schijlen , W Ligterink , M Oliver , J Farrant and H Hilhorst. “A ‘footprint’ of desiccation tolerance in the genome of Xerophyta viscosa”. Nature Plants (2017) [link]

  • C Bazakos, M Hanemian, C Trontin, JM Jiménez-Gómez, O Loudet. “New Strategies and Tools in Quantitative Genetics: How to Go from the Phenotype to the Genotype”. Annual Review of Plant Biology (2017) [link]

 

2016

  • NA Müller, CL Wijnen, A Srinivasan, M Ryngajllo, I Ofner, T Lin, A Ranjan, D West, JN Maloof, NR Sinha, S Huang, D Zamir, JM Jiménez-Gómez “Domestication selected for deceleration of the circadian clock in cultivated tomato”. Nature Genetics (2016) [link]

  • NA Müller, JM Jiménez-Gómez. “Analysis of Circadian Leaf Movements”. Environmental Responses in Plants: Methods and Protocols (2016) [link]

  • M Bar, A Israeli, M Levy, HB Gera, JM Jiménez-Gómez, S Kouril, P Tarkowski, and N Ori. “CLAUSA Is a MYB Transcription Factor That Promotes Leaf Differentiation by Attenuating Cytokinin Signaling”. The Plant Cell .(2016) [link]

  • A Srinivasan, JM Jiménez-Gómez, F Fornara, W Soppe, V Brambilla. “Alternative splicing enhances transcriptome complexity in desiccating seeds”. J. Integr. Plant Biol. (2016) [link]

  • C Perea-Resa, C Carrasco-López, R Catalá, V Turečková, O Novak, W Zhang, LE Sieburth, JM Jiménez-Gómez and J Salinas. “The LSM1-7 complex controls plant adaptation to adverse environmental conditions by promoting selective mRNA decapping”. The Plant Cell (2016) [link]

  • T Mosquera, MF Alvarez, JM Jiménez-Gómez, MS Muktar, MJ Paulo, S Steinemann, J Li, A Draffehn, A Hofmann, J Lübeck, J Strahwald, E Tacke, HR Hofferbert, B Walkemeier, C Gebhardt. "Targeted and Untargeted Approaches Unravel Novel Candidate Genes and Diagnostic SNPs for Quantitative Resistance of the Potato (Solanum tuberosum L.) to Phytophthora infestans Causing the Late Blight Disease”. PLoS One (2016) [link]

 

2014

  • I Schmalenbach, L Zhang, M Reymond, JM Jiménez-Gómez. “The relationship between flowering time and growth responses to drought in the Arabidopsis Landsberg erecta x Antwerp-1 population”. Frontiers in Plant Science (2014) [link]

  • A Bolger, F Scossa, ME Bolger, C Lanz, F Maumus, T Tohge, H Quesneville, S Alseekh, I Sørensen, G Lichenstein, EA Fich, M Conte, H Keller, K Schneeberger, R Schwacke, I Ofner, J Vrebalov, Y Xu, S Osorio, SA Aflitos, E Schijlen, JM Jiménez-Gómez, M Ryngajllo, S Kimura, R Kumar, D Koenig, LR Headland, JN Maloof, N Sinha, RCHJ van Ham, RK Lankhorst, L Mao, A Vogel, B Arsova, R Panstruga, Z Fei, JKC Rose, D Zamir, F Carrari, JJ Giovannoni, D Weigel, B Usadel, AR Fernie. "The genome of the stress-tolerant wild tomato species Solanum pennellii". Nature Genetics (2014) [link]

  • J Gloggnitzer, S Akimcheva, A Srinivasan, B Kusenda, N Riehs, H Stampfl, J Bautor, B Dekrout, C Jonak, JM Jiménez-Gómez, JE Parker, K Riha. "Nonsense-Mediated mRNA Decay Modulates Immune Receptor Levels to Regulate Plant Antibacterial Defense". Cell Host & Microbe (2014) [link]

  • I Schmalenbach, L Zhang, M Ryngajllo, JM Jiménez-Gómez. “Functional analysis of the Landsberg erecta allele of FRIGIDA”. BMC Plant Biology (2014) [link]

  • JM Jiménez-Gómez. “Network types and their application in natural variation studies in plants”. Current Opinion in Plant Biology (2014) [link]

 

2013

  • DH Chitwood, R Kumar, LR Headland, A Ranjan, MF Covington, Y Ichihashi, D Fulop, JM Jiménez-Gómez, J Peng, JN Maloof and NR Sinha. "A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines". The Plant Cell (2013) [link]
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  • D Koenig*, JM Jiménez-Gómez*, S Kimura, D Fulop, DH Chitwood, LR Headland, R Kumar, MF Covington, U Kumar Devisetty, AV Tat, T Tohge, A Bolger, K Schneeberger, S Ossowski, C Lanz, G Xiong, M Taylor-Teeples, SM Brady, M Pauly, D Weigel, B Usadel, AR Fernie, J Peng, NR Sinha and JN Maloof. “Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato”. PNAS (2013) [link]
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2012

  • M Sharlach, D Dahlbeck, L Liu, J Chiu, JM Jiménez-Gómez, S Kimura, D Koenig, JN Maloof, N Sinha, GV Minsavage, JB Jones, RE Stall, BJ Staskawicz. “Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716”. Theor Appl Genet (2012) [link]
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  • DH Chitwood, LR Headland, DL Filiault, R Kumar, JM Jiménez-Gómez, AV Schrager, DS Park, J Peng, NR Sinha and JN Maloof. “Native environment modulates leaf size and response to simulated foliar shade across wild tomato species”. PLoS ONE (2012) [link]

 

2011

  • JM Jiménez-Gómez, J Corwin, B Joseph, JN Maloof and DJ Kliebenstein. "Genomic Analysis of QTLs and Genes Altering Natural Variation in Stochastic Noise". PLoS Genet (2011) [link]

  • R Kerwin, JM Jiménez-Gómez, SL Harmer, JN Maloof and DJ Kliebenstein. "Network Quantitative Trait Loci Mapping of Circadian Clock Outputs Identifies Metabolic Pathway-to-Clock Linkages in Arabidopsis". The Plant Cell (2011) [link]

  • JM Jiménez-Gómez. "Next generation quantitative genetics in plants". Frontiers in Plant Physiology (2011) [link]

 

2010

  • JM Jiménez-Gómez, A Wallace and JN Maloof. "Network Analysis Identifies ELF3 as a QTL for the Shade Avoidance Response in Arabidopsis". PLoS Genet (2010) [link]

 

2009

  • JM Jimenez-Gomez and JM Maloof." Sequence diversity in three tomato species: SNPs, markers, and molecular evolution". BMC Plant Biology (2009) [link]

  • JM Jiménez-Gómez and JN Maloof. "Plant research accelerates along the (bio)informatics superhighway. Symposium on Plant Sensing, Response and Adaptation to the Environment". EMBO Reports (2009) [link]

 

2007

  • JM Jiménez-Gómez C Alonso-Blanco, A Borja, G Anastasio, T Angosto, R Lozano and JM Martínez-Zapater. "Quantitative genetic analysis of flowering time in tomato". Génome (2007) [link]

 

 

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