User: Paul Magnano
Electronic notebook of changes made
- Download sample file data input file change file to my name and input my data from Week 12 Assignment.
- Copy matrix and paste into network, network_weights and network_thresholds worksheet.
- Go to degradation_rate worksheet and paste list of transcription factors
- Look up systematicname of genes through YEASTRACT.
- Look up degradation rates and if transcription factor does not appear in file, put value "0.027182242."
- For production_rate sheet, paste systemicname and standardname from degradation_rate sheet into production_rate sheet.
- Calculate degradation rate X two and put into production rate column.
- For log2_concentrations sheet, paste systematicname and standard name.
- Column headings should be 15, 30 and 60. Put in average log fold change from week 9 spreadsheet.
- For concentration_sigmas sheet, cal standard deviation for 15, 30 , and 60 timepoints
- Leave optimization_parameters worksheet alone.
- For simulation_times worksheet, simulate in five minute increments from 0 to 60 minutes.
- Paste in standard names for next worksheet.
- Upload to LionShare