Sandbox/papers

1. Kelly JR, Rubin AJ, Davis JH, Ajo-Franklin CM, Cumbers J, Czar MJ, de Mora K, Glieberman AL, Monie DD, and Endy D. Measuring the activity of BioBrick promoters using an in vivo reference standard. J Biol Eng. 2009 Mar 20;3:4. DOI:10.1186/1754-1611-3-4 |
2. St-Pierre F and Endy D. Determination of cell fate selection during phage lambda infection. Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20705-10. DOI:10.1073/pnas.0808831105 |

   PDF reprint

3. Canton B, Labno A, and Endy D. Refinement and standardization of synthetic biological parts and devices. Nat Biotechnol. 2008 Jul;26(7):787-93. DOI:10.1038/nbt1413 |

   PDF reprint

4. Shetty RP, Endy D, and Knight TF Jr. Engineering BioBrick vectors from BioBrick parts. J Biol Eng. 2008 Apr 14;2:5. DOI:10.1186/1754-1611-2-5 |
5. Apgar JF, Toettcher JE, Endy D, White FM, and Tidor B. Stimulus design for model selection and validation in cell signaling. PLoS Comput Biol. 2008 Feb;4(2):e30. DOI:10.1371/journal.pcbi.0040030 |
6. Kosuri S, Kelly JR, and Endy D. TABASCO: A single molecule, base-pair resolved gene expression simulator. BMC Bioinformatics. 2007 Dec 19;8:480. DOI:10.1186/1471-2105-8-480 |
7. Bügl H, Danner JP, Molinari RJ, Mulligan JT, Park HO, Reichert B, Roth DA, Wagner R, Budowle B, Scripp RM, Smith JA, Steele SJ, Church G, and Endy D. DNA synthesis and biological security. Nat Biotechnol. 2007 Jun;25(6):627-9. DOI:10.1038/nbt0607-627 |

   PDF reprint

8. Garfinkel MS, Endy D, Epstein GL, and Friedman RM. Synthetic genomics | options for governance. Biosecur Bioterror. 2007 Dec;5(4):359-62. DOI:10.1089/bsp.2007.0923 |

   (Full Report)

9. Endy D. Foundations for engineering biology. Nature. 2005 Nov 24;438(7067):449-53. DOI:10.1038/nature04342 |

   PDF reprint

10. Chan LY, Kosuri S, and Endy D. Refactoring bacteriophage T7. Mol Syst Biol. 2005;1:2005.0018. DOI:10.1038/msb4100025 |

    PDF reprint Nature: News & Views October 2004 version

11. Colman-Lerner A, Gordon A, Serra E, Chin T, Resnekov O, Endy D, Pesce CG, and Brent R. Regulated cell-to-cell variation in a cell-fate decision system. Nature. 2005 Sep 29;437(7059):699-706. DOI:10.1038/nature03998 |
12. Endy D, Kong D, and Yin J. Intracellular kinetics of a growing virus: a genetically structured simulation for bacteriophage T7. Biotechnol Bioeng. 1997 Jul 20;55(2):375-89. DOI:10.1002/(SICI)1097-0290(19970720)55:2<375::AID-BIT15>3.0.CO;2-G |