User:Agustino Martinez-Antonio

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Contact Info

Agustino Martínez-Antonio (an artistic interpretation)

• Agustino Martínez-Antonio
• Cinvestav-Campus Guanajuato
• Address: Km. 9.6 Libramiento Norte Carretera Irapuato-León Apartado postal 629, C.P. 36500 Irapuato Guanajuato, México.
• Email: amartinez@ira.cinvestav.mx

I work in the Genetic Engineering Department at Research and Advanced Studies Center of the National Polytechnic Institute (CINVESTAV-IPN). My research interest is in systems and synthetic biology.

Education

• 2001, PhD Biochemical Sciences, Biotechnology Institute of the National Autonomous University of Mexico.
• 1997, MS Biotechnology, Biotechnology Institute of the National Autonomous University of Mexico.
• 1993, BS Chemist-Biologyst, Faculty of Chemical Sciences of the Benito Juárez Autonomous University of Oaxaca

Research interests

1. Interest 1: Loops, switches, circuits within biological regulatory networks
2. Interest 2: Emergency of memory and social behavior
3. Interest 3: Engineering of new biological systems

Publications

1. Janga SC, Salgado H, Martínez-Antonio A, and Collado-Vides J. Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli. Nucleic Acids Res 2007; 35(20) 6963-72. doi:10.1093/nar/gkm743 pmid:17933780. PubMed HubMed [Paper1]
2. Salgado H, Martínez-Antonio A, and Janga SC. Conservation of transcriptional sensing systems in prokaryotes: a perspective from Escherichia coli. FEBS Lett 2007 Jul 24; 581(18) 3499-506. doi:10.1016/j.febslet.2007.06.059 pmid:17617412. PubMed HubMed [Paper2]
3. Janga SC, Salgado H, Collado-Vides J, and Martínez-Antonio A. Internal versus external effector and transcription factor gene pairs differ in their relative chromosomal position in Escherichia coli. J Mol Biol 2007 Apr 20; 368(1) 263-72. doi:10.1016/j.jmb.2007.01.019 pmid:17321548. PubMed HubMed [Paper3]
4. Salgado H, Santos-Zavaleta A, Gama-Castro S, Peralta-Gil M, Peñaloza-Spínola MI, Martínez-Antonio A, Karp PD, and Collado-Vides J. The comprehensive updated regulatory network of Escherichia coli K-12. BMC Bioinformatics 2006 Jan 6; 7 5. doi:10.1186/1471-2105-7-5 pmid:16398937. PubMed HubMed [Paper4]
5. Salgado H, Gama-Castro S, Peralta-Gil M, Díaz-Peredo E, Sánchez-Solano F, Santos-Zavaleta A, Martínez-Flores I, Jiménez-Jacinto V, Bonavides-Martínez C, Segura-Salazar J, Martínez-Antonio A, and Collado-Vides J. RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Res 2006 Jan 1; 34(Database issue) D394-7. doi:10.1093/nar/gkj156 pmid:16381895. PubMed HubMed [Paper5]
6. Martínez-Antonio A, Janga SC, Salgado H, and Collado-Vides J. Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli. Trends Microbiol 2006 Jan; 14(1) 22-7. doi:10.1016/j.tim.2005.11.002 pmid:16311037. PubMed HubMed [Paper6]
7. Resendis-Antonio O, Freyre-González JA, Menchaca-Méndez R, Gutiérrez-Ríos RM, Martínez-Antonio A, Avila-Sánchez C, and Collado-Vides J. Modular analysis of the transcriptional regulatory network of E. coli. Trends Genet 2005 Jan; 21(1) 16-20. doi:10.1016/j.tig.2004.11.010 pmid:15680508. PubMed HubMed [Paper7]
8. Salgado H, Gama-Castro S, Martínez-Antonio A, Díaz-Peredo E, Sánchez-Solano F, Peralta-Gil M, Garcia-Alonso D, Jiménez-Jacinto V, Santos-Zavaleta A, Bonavides-Martínez C, and Collado-Vides J. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. Nucleic Acids Res 2004 Jan 1; 32(Database issue) D303-6. doi:10.1093/nar/gkh140 pmid:14681419. PubMed HubMed [Paper8]
9. Martínez-Antonio A, Salgado H, Gama-Castro S, Gutiérrez-Ríos RM, Jiménez-Jacinto V, and Collado-Vides J. Environmental conditions and transcriptional regulation in Escherichia coli: a physiological integrative approach. Biotechnol Bioeng 2003 Dec 30; 84(7) 743-9. doi:10.1002/bit.10846 pmid:14708114. PubMed HubMed [Paper9]
10. Martínez-Antonio A and Collado-Vides J. Identifying global regulators in transcriptional regulatory networks in bacteria. Curr Opin Microbiol 2003 Oct; 6(5) 482-9. pmid:14572541. PubMed HubMed [Paper10]
11. Martínez A and Soberón-Chávez G. Characterization of the lipA gene encoding the major lipase from Pseudomonas aeruginosa strain IGB83. Appl Microbiol Biotechnol 2001 Sep; 56(5-6) 731-5. pmid:11601622. PubMed HubMed [Paper11]

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Useful links

• ISI Researcher ID [[1]]
• Projects (spanish)[[2]]