User:Eoin Brodie

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Eoin Brodie
Eoin Brodie

I am a Microbial Ecologist at Lawrence Berkeley National Lab]. Research in our group focuses on determining and better understanding the factors that structure and control microbial communities and the functional implications of alterations in community composition.

For this reason our research involves a wide range of microbial systems including surface and subsurface soils, deep subsurface environments, invertebrate guts, watersheds and contaminated aquifers, urban aerosols and various mammalian microbiomes.

To assess microbial community composition in a high-throughput and high-resolution manner we employ state-of-the-science microarray and DNA sequencing technologies and relate microbiological parameters to functional and physical properties of ecosystems using stable-isotopes, biochemical assays, geochemical/geophysical measurements and statistical modeling.

We learned about OpenWetWare from Colleagues, and have joined to contribute protocols developed in our lab.


  • 2001, PhD, Microbial Ecology, University College Dublin, Ireland
  • 1996, BS, Microbiology, University College Dublin, Ireland

Research interests

  1. Molecular microbial ecology
  2. Bioremediation
  3. Human microbiome
  4. Stable-isotope probing


  1. West KA, Johnson DR, Hu P, DeSantis TZ, Brodie EL, Lee PK, Feil H, Andersen GL, Zinder SH, and Alvarez-Cohen L. . pmid:18359838. PubMed HubMed [Paper1]
  2. Johnson DR, Brodie EL, Hubbard AE, Andersen GL, Zinder SH, and Alvarez-Cohen L. . pmid:18310438. PubMed HubMed [Paper2]
  3. Lynch SV, Dixon L, Benoit MR, Brodie EL, Keyhan M, Hu P, Ackerley DF, Andersen GL, and Matin A. . pmid:17664315. PubMed HubMed [Paper3]
  4. Flanagan JL, Brodie EL, Weng L, Lynch SV, Garcia O, Brown R, Hugenholtz P, DeSantis TZ, Andersen GL, Wiener-Kronish JP, and Bristow J. . pmid:17409203. PubMed HubMed [Paper4]
  5. DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, and Andersen GL. . pmid:17334858. PubMed HubMed [Paper5]
  6. Brodie EL, DeSantis TZ, Parker JP, Zubietta IX, Piceno YM, and Andersen GL. . pmid:17182744. PubMed HubMed [Paper6]
  7. Lin LH, Wang PL, Rumble D, Lippmann-Pipke J, Boice E, Pratt LM, Sherwood Lollar B, Brodie EL, Hazen TC, Andersen GL, DeSantis TZ, Moser DP, Kershaw D, and Onstott TC. . pmid:17053150. PubMed HubMed [Paper7]
  8. Brodie EL, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JM, and Firestone MK. . pmid:16957256. PubMed HubMed [Paper8]
  9. DeSantis TZ Jr, Hugenholtz P, Keller K, Brodie EL, Larsen N, Piceno YM, Phan R, and Andersen GL. . pmid:16845035. PubMed HubMed [Paper9]
  10. DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, and Andersen GL. . pmid:16820507. PubMed HubMed [Paper10]
  11. Abulencia CB, Wyborski DL, Garcia JA, Podar M, Chen W, Chang SH, Chang HW, Watson D, Brodie EL, Hazen TC, and Keller M. . pmid:16672469. PubMed HubMed [Paper11]
  12. Hu P, Brodie EL, Suzuki Y, McAdams HH, and Andersen GL. . pmid:16321948. PubMed HubMed [Paper12]
  13. Tokunaga TK, Wan J, Pena J, Brodie EL, Firestone MK, Hazen TC, Sutton SR, Lanzirotti A, and Newville M. . pmid:16201631. PubMed HubMed [Paper13]
  14. Lynch SV, Brodie EL, and Matin A. . pmid:15576768. PubMed HubMed [Paper14]
  15. Kennedy N, Brodie E, Connolly J, and Clipson N. . pmid:16917526. PubMed HubMed [Paper15]
  16. Wan J, Tokunaga TK, Brodie E, Wang Z, Zheng Z, Herman D, Hazen TC, Firestone MK, and Sutton SR. . pmid:16173577. PubMed HubMed [Paper16]
  17. Kennedy N, Brodie E, Connolly J, and Clipson N. . pmid:15344932. PubMed HubMed [Paper17]
  18. Brodie E, Edwards S, and Clipson N. . pmid:12209255. PubMed HubMed [Paper18]
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  23. Mark Ptashne. A genetic switch. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press, 2004. isbn:0879697164. [Book1]
All Medline abstracts: PubMed HubMed

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