User:Jose Fabricio Lopez/Notebook/GEDF/2012/09/19

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Gene Expression and Development in Fungi Main project page
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Contents

Trichoderma & P. vulgaris interaction

Things to do

  • Inoculate Beans new beans stock with T. atro.
  • Water plants.

Things done

  • Inoculated. n=10
  • Watered.

Loogbook

  • Inoculated with 1x10^6 conid.

Intergenic sequences in T.atroviride

Things to do

  • Augustus prediction with training
    • BOTH.
    • Genome.
    • 0bp away.

Things done

  • Prediction Genome

Loogbook

Genome

Submitting


Wed Sep 19 21:21:32 CEST 2012 - Message:


Details of your job:

Prediction job ID: predN*******

Parameter archive: parameters.tar.gz

Genome file: Tri****v2.fasta

User set UTR prediction: false

Report genes on: both strands

Alternative transcripts: none

Allowed gene structure: predict any number of (possibly partial) genes

Ignore conflictes with other strand: false

Results


Wed Sep 19 21:21:32 CEST 2012 - Message:


Details of your job:

Prediction job ID: predNm*****

Parameter archive: parameters.tar.gz

Genome file: T*****+v2.fasta

User set UTR prediction: false

Report genes on: both strands

Alternative transcripts: none

Allowed gene structure: predict any number of (possibly partial) genes

Ignore conflictes with other strand: false


Wed Sep 19 22:06:34 CEST 2012 - Message:


Your AUGUSTUS prediction job predNm**** finished.

BOTH

Submitting


Wed Sep 19 21:27:43 CEST 2012 - Message:


Details of your job:

Prediction job ID: pred******

Parameter archive: parameters.tar.gz

Genome file: ****BOTH.fas

User set UTR prediction: false

Report genes on: both strands

Alternative transcripts: none

Allowed gene structure: predict any number of (possibly partial) genes

Ignore conflictes with other strand: false

Results


Wed Sep 19 21:27:43 CEST 2012 - Message:


Details of your job:

Prediction job ID: predd1*****

Parameter archive: parameters.tar.gz

Genome file: ******BOTH.fas

User set UTR prediction: false

Report genes on: both strands

Alternative transcripts: none

Allowed gene structure: predict any number of (possibly partial) genes

Ignore conflictes with other strand: false


Wed Sep 19 21:47:44 CEST 2012 - Message:


Your AUGUSTUS prediction job predd1****** finished.

0bp

Submitting


Wed Sep 19 21:34:04 CEST 2012 - Message:


Details of your job:


Prediction job ID: predW******

Parameter archive: parameters.tar.gz

Genome file: IntergenicFasta.fna

User set UTR prediction: false

Report genes on: both strands

Alternative transcripts: none

Allowed gene structure: predict any number of (possibly partial) genes

Ignore conflictes with other strand: false


Results


Wed Sep 19 21:34:04 CEST 2012 - Message:


Details of your job:

Prediction job ID: predWa******

Parameter archive: parameters.tar.gz

Genome file: ***********.fna

User set UTR prediction: false

Report genes on: both strands

Alternative transcripts: none

Allowed gene structure: predict any number of (possibly partial) genes

Ignore conflictes with other strand: false


Wed Sep 19 21:39:05 CEST 2012 - Message:


Your AUGUSTUS prediction job predWa****** finished.

Extras

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