User:Tk/Notebook/MF/2009/03/17

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DnaA binding sites in MF genome

Location of ttwtmcaca sequences in MF using the tool at: RSAT

See Gorinov05 paper for a discussion of dnaA binding sequences in genomes.


R   1359   1367 tttcTTTTCCACAcaaa (dnaA - dnaN intergenic region)
D   1429   1437 agtgTTTTCCACAtatc (dnaA - dnaN intergenic region)
R  28522  28530 actaTTTTCCACAttag  within Mfl020
R  34340  34348 ttgtTTTTCCACAacca  within Mfl024
D  39493  39501 aagtTTATACACAacag  within Mfl027
R  43747  43755 tattTTTTACACAtttc (Mfl031 (nagB) - Mfl033 (rpiR like) intergenic region)
R  50002  50010 gataTTTTACACAtatt  within Mfl036
D 100820 100828 atttTTTTACACAaggt  within Mfl079
D 102723 102731 gcttTTTTACACAaatt (Mfl079 - Mfl080 (rpsF, S6) intergenic region)
D 124924 124932 tactTTTTACACAaata  within Mfl100
D 215208 215216 atttTTATACACAttta  within Mfl184
D 306952 306960 gtgaTTTTACACAaata  within Mfl268
R 361959 361967 tgttTTTTACACAtttg  within Mfl312
R 387775 387783 gtggTTTTACACAagta  within Mfl320
D 397117 397125 gtttTTTTACACAaaaa (Mfl341 - Mfl342 (guaA) intergenic region) (gmp synthase)
R 431744 431752 ttttTTATACACAagaa (Mfl369 (comEC) - Mfl370 intergenic region)
D 459432 459440 aatcTTTTACACAtgta  within Mfl399
D 550979 550987 taatTTTTACACAggtg  within Mfl466
R 597220 597228 aagtTTTTACACAaaaa  within Mfl507
D 633823 633831 gttcTTTTACACAataa  within Mfl537
D 636681 636689 tttgTTATACACAacag  within Mfl541
D 643823 643831 gtatTTATCCACAaaaa  within Mfl551
D 676297 676305 tgtgTTTTCCACAtttc (Mfl580 (dnaB) - Mfl581 (mutM) intergenic region)
D 683642 683650 aagaTTATCCACAgcct  within Mfl584
D 692095 692103 ctatTTTTCCACAacca  within Mfl592
D 692765 692773 tatgTTTTCCACAtatg  within Mfl594
D 698876 698884 taaaTTTTCCACAaaaa  within Mfl597 (5' end of rpoC)
R 705083 705091 caatTTTTCCACAtaat  within Mfl600
R 710926 710934 ttctTTTTACACAtaaa  within Mfl606
R 740017 740025 acaaTTATCCACAaaat  within Mfl634 (prfA) peptide chain release factor
R 758091 758099 tgttTTATACACAggtt  within Mfl652
R 770620 770628 cagcTTTTACACAaatg  within Mfl664
R 793070 793078 ccacTTTTCCACAaaag (Mfl683 (rpmH) - Mfl001 (dnaA) intergenic region)
D 793158 793166 ttttTTATCCACAcatt (Mfl683 (rpmH) - Mfl001 (dnaA) intergenic region)
R 793170 793178 aaagTTTTCCACAatgt (Mfl683 (rpmH) - Mfl001 (dnaA) intergenic region)




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