User:Liuzhec: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
No edit summary
No edit summary
Line 125: Line 125:
{{Special:Recentchanges/b=IGEM:Harvard/2006/DNA_nanostructures/&limit=20}}
{{Special:Recentchanges/b=IGEM:Harvard/2006/DNA_nanostructures/&limit=20}}
INSERT CurrentTimePlugin format='yyyy.MM.dd G \'at\' hh:mm:ss z'
INSERT CurrentTimePlugin format='yyyy.MM.dd G \'at\' hh:mm:ss z'
<div id="mainpage">
<hr class=divider>
<div id="about">
{| align="right"
| Welcome to Harvard's 2006 '''iGEM''' team wiki! Please click on the project of interest for up to date information and current progress.
| [[Image:Igem2006logo.gif|40px]]
|}
</div><br><br>
<hr class=divider>
{| cellspacing="5"
|width="280px" bgcolor="#DDDDFF" |
<!-- COMMUNITY HEADER with edit link-->
<h3><html>
<img src="http://openwetware.org/images/b/b9/Icon_board.png" alt="Resources">
</html>Planning</h3>
<hr/>
<!-- END COMMUNITY HEADER-->
===News and Announcements===
*[http://fontana.med.harvard.edu/stroustr/igem/ Jamboree Photos]
*[[/Final Presentation|Final Presentation]]
===Team===
*[[/Background Reading/]]
*[[/Meetings/]]
*[[/Lab Intro/|Lab schedule]]
*[[/Personnel Schedule/|Personnel schedule]]
===Projects===
*[[/Cyanobacteria/]]
**[[/Cyanobacteria/Notebook|Notebook]]
*[[/Cell surface targeting|Cell Surface Targeting]]
**[[/Adaptamers/|Adaptamers]]
**[[/Fusion proteins/|Streptavidin Cell Surface Fusion Protein]]
*[[/DNA nanostructures/]]
**[[/DNA_nanostructures/Notebook|Notebook]]
===Project Planning===
*[[/Brainstorming/]]
*[[Past project presentation sign ups|Sign up]]
*[[Past project notes]]
===For visitors===
*[http://www.technologyreview.com/BioTech/17790/ Weaving Barrels from DNA] <small>(11/15/06)</small>
*[http://parts.mit.edu/wiki/index.php/Harvard_2006 Official 2006 Harvard iGEM team page]
*[[Synthetic Biology]]
*[http://parts2.mit.edu/wiki/index.php/Main_Page Official iGEM page]
*[http://parts2.mit.edu/wiki/index.php/Schools_Participating_in_iGEM_2006 Participating Institutions]
*[http://karma.med.harvard.edu/wiki/IGEM_2005 2005 Harvard iGEM wiki]
*[http://www.nature.com/nature/comics/syntheticbiologycomic/ SynBio Comic]
*[http://karma.med.harvard.edu/w/images/7/7c/Igem05-nyt-article.pdf NYT article] <small>(11/24/05)</small>
|width="230px" bgcolor="#EEEEEE" |
<!-- NEWS HEADER with edit link-->
<h3><html>
<img src="http://openwetware.org/images/e/e2/Icon_info.png" alt="News" border="0">
</html>In the Lab</h3>
<hr/>
<!-- END NEWS HEADER with edit link-->
===Protocols===
*[[Protocols | Open Wetware Protocols]]
**[[DNA_Ligation | Ligation Protocol]]
*[[IGEM:Harvard/2006/Protocols | Our Own Protocols]]
===Lab Notebooks===
*[[IGEM:Harvard/2006/Laboratory_Notebooks | Laboratory Notebooks]]
===Useful links===
iGEM and OWW
*[[Etiquette|OpenWetWare Etiquette]]
*[[IGEM|Other iGEM teams on OWW]]
*[http://parts.mit.edu/registry BioBricks registry]
*[http://parts.mit.edu/wiki/index.php/Harvard_2006 Harvard page on iGEM wiki]
Literature
*[http://nrs.harvard.edu/urn-3:hul.eresource:pubmedpi Pubmed for Harvard PIN holders]
*[http://portal.isiknowledge.com.ezp1.harvard.edu ISI Web of Science]
Python
*[http://diveintopython.org/toc/index.html Dive Into Python]
*[http://docs.python.org/tut/tut.html Python Tutorial]
*[http://wiki.python.org/moin/PerlPhrasebook Perl to Python]
*[http://www.python.org/doc/2.4.1/lib/lib.html Python Lib Ref]
*[http://www.amk.ca/python/howto/regex/ Py Reg Ex]
Miscellaneous
*[http://people.fas.harvard.edu/~sdouglas/table.cgi Excel &rarr; Wiki Table converter]
*[[IGEM:Harvard/2006/Presentation Advice | Presentation Advice]]
*[[Kafatos:DNA_1kbplus_ladder | 1 kb+ ladder]]
*[http://www.epibio.com/techapp.asp Buffer and gel tables]
*[http://www.promega.com/biomath/default.htm BioMath calculators (Promega)]
|width="200px" bgcolor="#DDDDFF" |
<!-- PEOPLE HEADER with edit link-->
<h3><html>
<img src="http://openwetware.org/images/3/39/Icon_groups.png" alt="People">
</html>People</h3>
<hr/>
<!-- END PEOPLE HEADER with edit link-->
===[[/Super Heroes|Super Heroes]]===
=====DNA Nanostructures=====
*[[User:TChan|Tiffany Chan]] ([[User_talk:TChan|talk]])
*[[User:Kfifer|Katherine Fifer]] ([[User_talk:Kfifer|talk]])
*[[User:Vlau|Valerie Lau]] ([[User_talk:Vlau|talk]])
*[[User:Matthewmeisel|Matthew Meisel]] ([[User_talk:Matthewmeisel|talk]])
=====Cyanobacteria=====
*[[User:Hetmann|Hetmann Hsieh]] ([[User_talk:Hetmann|talk]])
*[[User:JeffreyLau|Jeffrey Lau]] ([[User_talk:JeffreyLau|talk]])
*[[User:Zhipeng Sun|Zhipeng Sun]] ([[User_talk:Zhipeng_Sun|talk]])
*[[User:DavidRamos|David Ramos]] ([[User_talk:DavidRamos|talk]])
=====Cell surface targeting=====
*[[User:Perry|Perry Tsai]] ([[User_talk:Perry|talk]])
*[[User:Lhahn|Lewis Hahn]] ([[User_talk:Lhahn|talk]])
===Teaching Fellows===
*[[User:doucette|Chris Doucette]] ([[User_talk:Doucette|talk]])
*[[User:ShawnDouglas|Shawn Douglas]] ([[User_talk:ShawnDouglas|talk]])
*[[User:Stroustr|Nicholas Stroustrup]] ([[User_talk:Stroustr|talk]])
===Advisors===
*[[User:PamSilver|Pamela Silver]] ([[User_talk:PamSilver|talk]])
*[[User:Geochurch|George Church]] ([http://arep.med.harvard.edu/gmc/email.html talk])
*[http://www.eecs.harvard.edu/~rad/ Radhika Nagpal]
*[[User:jvshah|Jagesh V. Shah]]
*[[User:wmshih|William Shih]] ([[User_talk:wmshih|talk]])
*Alain Viel
|}
[[Image:Harvard06_iGem.JPG|left|thumb|300px|Harvard 2006 iGem team. <br><br>
'''Back row''' (L-R): [[User:Lhahn|Lewis]], [[User:Kfifer|Katie]], [[User:TChan|Tiffany]], [[User:Vlau|Valerie]], [[User:Zhipeng Sun|Zhipeng]], [[User:Matthewmeisel|Matt]]. <br>
'''Front row''' (L-R): [[User:Hetmann|Hetmann]], [[User:JeffreyLau|Jeffrey]], [[User:DavidRamos|David]], [[User:Perry|Perry]]. <br><br>
And yes, that is the back end of a [http://www.news.harvard.edu/gazette/2003/09.18/28-rhino.html bronze rhinoceros].]]
.
</div>
A thanks goes to [[iGEM:MIT/2006|MIT's team page]] for our page formatting.
__NOEDITSECTION__
__NOTOC__

Revision as of 19:15, 25 April 2007

{{{ ADD }}}

<html> <img src="http://openwetware.org/images/e/e2/Icon_info.png" alt="News" border="100"> </html>NEWS

<html> <img src="http://openwetware.org/images/b/b9/Icon_board.png" alt="Resources"> </html> PLANNING

<html> <img src="http://openwetware.org/images/e/e2/Icon_info.png" alt="News" border="0"> </html>WORKSHOP

<html> <img src="http://openwetware.org/images/b/b9/Icon_board.png" alt="Resources"> </html> PROJECT

<html> <img src="http://openwetware.org/images/e/e2/Icon_info.png"> </html> USEFUL LINKS

<html> <img src="http://openwetware.org/images/3/39/Icon_groups.png" alt="People"> </html>PEOPLE

Students


Advisors





Project Overview

  • Our goal is to design and implement molecular containers, which can be dynamically opened and closed by an external stimulus.
  • The containers will be implemented as DNA nanostructures, which afford a significant degree of positional control and chemical versatility.
  • As an initial proof-of-concept, we plan to use our DNA containers to demonstrate controllable activation ("delivery") of anti-thrombin aptamers.
  • We expect that molecular containers could have several interesting scientific and clinical applications, such as
    • Drug and gene delivery
    • Bio-marker scavenging (early detection of biomarkers)
    • Directed evolution (compartmentalized selections)
    • Using multiplexing for combinatorial chemical synthesis
    • Capture and stabilization of multiprotein complexes
    • Protein folding (chaperones)
    • Cell sorting

==Working Team Members== edit

Recent Changes

List of abbreviations:
N
This edit created a new page (also see list of new pages)
m
This is a minor edit
b
This edit was performed by a bot
(±123)
The page size changed by this number of bytes

4 June 2024

 N    14:54  Production and Degradation Rate Papers‎‎ 10 changes history +2,387‎ [Nikkichun‎ (10×)]
 m   
14:54 (cur | prev) +275‎ Nikkichun talk contribs
 m   
14:50 (cur | prev) +319‎ Nikkichun talk contribs
     
13:55 (cur | prev) +300‎ Nikkichun talk contribs
 m   
13:34 (cur | prev) −53‎ Nikkichun talk contribs
 m   
13:32 (cur | prev) −12‎ Nikkichun talk contribs
 m   
13:31 (cur | prev) +359‎ Nikkichun talk contribs
 m   
13:15 (cur | prev) +337‎ Nikkichun talk contribs
     
12:24 (cur | prev) +242‎ Nikkichun talk contribs
 m   
12:17 (cur | prev) +51‎ Nikkichun talk contribs
N    
12:14 (cur | prev) +569‎ Nikkichun talk contribs (Created page with "After reviewing the data from this past year, it was found that production rates hold great significance in estimating GRNs. Trials with the initial toy network where P's were held constant gave much more accurate results than those where B's were held constant or no variables were held constant. Currently, these rates are based on the 2014 Neymotin et al. paper, but since this paper is now 7 years old, we wanted to investigate if there were more updated methods for calc...")
N    12:05  Nikki Chun - Summer 2024‎ diffhist +42‎ Nikkichun talk contribs (Created page with "Production and Degradation Rate Papers")
      12:04  User:Nikkichun‎‎ 2 changes history +18‎ [Nikkichun‎ (2×)]
     
12:04 (cur | prev) +1‎ Nikkichun talk contribs (→‎Journal Entries)
     
12:03 (cur | prev) +17‎ Nikkichun talk contribs (→‎Journal Entries)

3 June 2024

      09:17  McClean:LabMtgSchedule‎‎ 4 changes history +72‎ [Megan N McClean‎; Ljiang‎; Cytrynbaum‎ (2×)]
     
09:17 (cur | prev) +5‎ Cytrynbaum talk contribs
     
07:38 (cur | prev) +4‎ Ljiang talk contribs
     
07:37 (cur | prev) +1‎ Cytrynbaum talk contribs
     
07:24 (cur | prev) +62‎ Megan N McClean talk contribs
     07:13  User:Andor J Kiss‎ diffhist +205‎ Andor J Kiss talk contribs (→‎Publications)

2 June 2024

1 June 2024

31 May 2024

29 May 2024

      15:28  Schumer lab: Upload data from Sherlock to NCBI's SRA‎‎ 6 changes history +504‎ [S m aguillon‎ (6×)]
     
15:28 (cur | prev) 0‎ S m aguillon talk contribs (→‎Uploading Data from Sherlock to NCBI's SRA)
     
15:27 (cur | prev) +145‎ S m aguillon talk contribs (→‎Uploading Data from Sherlock to NCBI's SRA)
     
15:24 (cur | prev) +2‎ S m aguillon talk contribs (→‎Uploading Data from Sherlock to NCBI's SRA)
     
15:23 (cur | prev) +192‎ S m aguillon talk contribs (→‎Uploading Data from Sherlock to NCBI's SRA)
     
15:02 (cur | prev) +1‎ S m aguillon talk contribs (→‎Uploading Data from Sherlock to NCBI's SRA)
     
14:59 (cur | prev) +164‎ S m aguillon talk contribs (→‎Uploading Data from Sherlock to NCBI's SRA)
     10:47  Ernesto-Perez-Rueda:Publications‎ diffhist +56‎ Ernesto Perez-Rueda talk contribs

INSERT CurrentTimePlugin format='yyyy.MM.dd G \'at\' hh:mm:ss z'

Welcome to Harvard's 2006 iGEM team wiki! Please click on the project of interest for up to date information and current progress.


<html> <img src="http://openwetware.org/images/b/b9/Icon_board.png" alt="Resources"> </html>Planning

News and Announcements

Team

Projects

Project Planning

For visitors

<html> <img src="http://openwetware.org/images/e/e2/Icon_info.png" alt="News" border="0"> </html>In the Lab

Protocols

Lab Notebooks

Useful links

iGEM and OWW

Literature

Python

Miscellaneous

<html> <img src="http://openwetware.org/images/3/39/Icon_groups.png" alt="People"> </html>People

Super Heroes

DNA Nanostructures
Cyanobacteria
Cell surface targeting

Teaching Fellows

Advisors

Harvard 2006 iGem team.

Back row (L-R): Lewis, Katie, Tiffany, Valerie, Zhipeng, Matt.
Front row (L-R): Hetmann, Jeffrey, David, Perry.

And yes, that is the back end of a bronze rhinoceros.

.

A thanks goes to MIT's team page for our page formatting.


Retrieved from "https://openwetware.org/mediawiki/index.php?title=User:Liuzhec&oldid=112441"