Registry of Standard Biological Models/Basic Component Models: Difference between revisions

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*Gene expression modeling:
*Gene expression modeling (using the IMPORT of the previously defined building blocks):
**[[Registry of Standard Biological Models/Basic_Component_Models/mRNA_Protein_Dynamic|mRNA_Protein_Dynamic]]
**mRNA and protein full dynamic modeling
**[[Registry of Standard Biological Models/Basic_Component_Models/Quasi state on mRNA dynamic|Quasi state on mRNA dynamic]]
***[[Registry of Standard Biological Models/Basic_Component_Models/Constitutive_mRNA_Protein_Expression_Dynamic|Constitutive_mRNA_Protein_Expression_Dynamic]] -> ConstitutivePromoter + mRNA + RBS + Protein
 
***[[Registry of Standard Biological Models/Basic_Component_Models/Activated_mRNA_Protein_Expression_Dynamic|Activated_mRNA_Protein_Expression_Dynamic]] -> ActivatedPromoter + mRNA + RBS + Protein
***[[Registry of Standard Biological Models/Basic_Component_Models/Repressed_mRNA_Protein_Expression_Dynamic|Repressed_mRNA_Protein_Expression_Dynamic]] -> RepressedPromoter + mRNA + RBS + Protein
**Protein dynamic modeling using quasi steady state approx on mRNA
***[[Registry of Standard Biological Models/Basic_Component_Models/Constitutive_Protein_Expression_Dynamic|Constitutive_mRNA_Protein_Expression_Dynamic]] -> ConstitutivePromoter_RBS_Coupled + Protein
***[[Registry of Standard Biological Models/Basic_Component_Models/Activated_Protein_Expression_Dynamic|Activated_mRNA_Protein_Expression_Dynamic]] -> ActivatedPromoter_RBS_Coupled + Protein
***[[Registry of Standard Biological Models/Basic_Component_Models/Repressed_Protein_Expression_Dynamic|Repressed_mRNA_Protein_Expression_Dynamic]] -> RepressedPromoter_RBS_Coupled + Protein


*[[Registry of Standard Biological Models/Basic_Component_Models/Inverter|Inverter]]
*[[Registry of Standard Biological Models/Basic_Component_Models/Inverter|Inverter]]


*[[Registry of Standard Biological Models/Basic_Component_Models/Oscillator|Oscillator]]
*[[Registry of Standard Biological Models/Basic_Component_Models/Oscillator|Oscillator]]

Revision as of 19:41, 7 September 2006

Here is a list of basic components available in the DNA Registry, each link intends to illustrate different modeling approaches and CellML descriptions:

  • attempt on fusing RBS and mRNA concepts together. it could show a more universal interface, equivalent to the promoter_RBS_coupled


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