Tregwiki:Multi-sequence visualization of features: Difference between revisions
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Latest revision as of 15:28, 9 December 2007
There is really no good tool for this yet that I know of. I've tried some but never really found what I wanted, two or more sequences with features plotted on them or display something like a synteny-plot:
- Alfresco
- ACT
- self-written tools that operate in text-mode (ugly, e.g. emboss' prettyseq)
- Apollo (also in synteny mode)
- Vector NTI in aligment mode ("Show all features")
- My MUMU-tools (export to svg)
- gff2ps (only one sequence?)
- Multipipmaker and Vista, when in doubt use multipipmaker, Vista comes almost without any documentation and uses a strange "plotfile" format
- feature_draw from bioperl (though only for one sequence at a time, very configurable)
- Argo whole genome viewer/editor, with comparative view