Van Oudenaarden Lab:C10G8.7

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

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>C10G8.7 (ceh-33 spliced coding region + 3'-UTR)

atgcaactaaactcctcatcgtttcatcctcatcattttacttgcgacacgaccagatactccgaagagcaagttgcatg catttgtgaagcattgtcaaatgatgcgaggaagttgtctcaatttgtttggactgtgctggaacgagatgagatgagaa acaatcagtatattctaaaagctcaagcttttttggcgtttcactcaaataactttaaagaactataccgcataatcgaa tctcatcattttgcatctgagcatcacttgcctctccaagagtggtggctcaatgctcattaccacgaagctgaaaaaat ccgcggacgccaacttggagctgttggaaaatacaggattcgaaggaaatatccacttccaagaactatttgggatggcg aggagactagttattgttttagagataaatctcgagtacttcttcgtgactggtattgccggaattcatatccaagtcca agagagaaaagggagttggctgaaaagacacatctgacagtgacccaagtatctaattggtttaagaatagaaggcaaag ggatagagctggagttcctgagccaaaagattgtctgaaagatattagtgaagaagaagatctgaaattaattcggaaaa ctgcatcaaaactttccaattcattccataatccatcagatttgtcttcctactctgctgcagctgccgccgcaacattt cccggtttttatatgaattacaatgatatgatgattggcgctggtacctcttatcaatctttataa

tgtttattttctatgtaatttctaataaagtccc

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Name of probe set: ceh-33

Probes designed on Mon, 01 Mar 10 12:57:31 -0700

37 probes designed for target of length 820 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

cgatgaggagtttagttgca, ceh-33_1, 1, 2, 45

caagtaaaatgatgaggatg, ceh-33_2, 2, 25, 35

ttcggagtatctggtcgtgt, ceh-33_3, 3, 47, 50

cacaaatgcatgcaacttgc, ceh-33_4, 4, 69, 45

ctcgcatcatttgacaatgc, ceh-33_5, 5, 91, 45

ccaaacaaattgagacaact, ceh-33_6, 6, 113, 35

tctcatctcgttccagcaca, ceh-33_7, 7, 135, 50

agaatatactgattgtttct, ceh-33_8, 8, 157, 25

cgccaaaaaagcttgagctt, ceh-33_9, 9, 179, 45

ctttaaagttatttgagtga, ceh-33_10, 10, 201, 25

gattcgattatgcggtatag, ceh-33_11, 11, 223, 40

gatgctcagatgcaaaatga, ceh-33_12, 12, 246, 40

caccactcttggagaggcaa, ceh-33_13, 13, 268, 55

ttcgtggtaatgagcattga, ceh-33_14, 14, 290, 40

ggcgtccgcggattttttca, ceh-33_15, 15, 312, 55

tattttccaacagctccaag, ceh-33_16, 16, 334, 40

tggatatttccttcgaatcc, ceh-33_17, 17, 356, 40

catcccaaatagttcttgga, ceh-33_18, 18, 378, 40

aaacaataactagtctcctc, ceh-33_19, 19, 400, 35

aagtactcgagatttatctc, ceh-33_20, 20, 422, 35

tccggcaataccagtcacga, ceh-33_21, 21, 444, 55

ctctcttggacttggatatg, ceh-33_22, 22, 467, 45

tcttttcagccaactccctt, ceh-33_23, 23, 489, 45

acttgggtcactgtcagatg, ceh-33_24, 24, 511, 50

tctattcttaaaccaattag, ceh-33_25, 25, 533, 25

ctccagctctatccctttgc, ceh-33_26, 26, 555, 55

agacaatcttttggctcagg, ceh-33_27, 27, 577, 45

ttcttcttcactaatatctt, ceh-33_28, 28, 599, 25

ttttccgaattaatttcaga, ceh-33_29, 29, 621, 25

gaattggaaagttttgatgc, ceh-33_30, 30, 643, 35

caaatctgatggattatgga, ceh-33_31, 31, 665, 35

cagctgcagcagagtaggaa, ceh-33_32, 32, 687, 55

aaaccgggaaatgttgcggc, ceh-33_33, 33, 709, 55

catatcattgtaattcatat, ceh-33_34, 34, 731, 20

aagaggtaccagcgccaatc, ceh-33_35, 35, 753, 55

aataaacattataaagattg, ceh-33_36, 36, 775, 15

ctttattagaaattacatag, ceh-33_37, 37, 797, 20