Registry of Standard Biological Models

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A collection of models of biological parts that can be reused and recombined to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.
Talk to us at - BioSysBio 2007, iGEM Jamboree Workshop 2007
Goals
  • To contribute to the Open Source Synthetic Biology effort.
  • To store, curate and support models related to physical Biobricks.
  • To drive and guide the experimental characterization of BioBricks.
  • To enable the reuse of modular part models.
  • To provide a forum for modelers to contribute to the BioBricks effort.
Activities
  • Defining Standard Biological Models
  • Building a collection of standard biological models.
  • Define a modeling description language that is:
    • Machine readable (XML, RDF)
    • Capable of describing gene expression networks
    • Modular (standardized defined inputs/ouputs)
    • Hierarchical (models are composable)
    • Capable of describing models that can be related to experimental data.

Recent edits:
List of abbreviations:
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23 May 2024

22 May 2024

     08:51  Beauchamp:Publications diffhist 0 Michael S Beauchamp talk contribs
     07:58  The Paper that Launched Microfluidics - Xi Ning‎‎ 21 changes history 0 [Sarah L. Perry‎ (21×)]
     
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     07:13  Capillary Electrophoresis - Andrew Maloney, Tim Towner, Camryn Payne‎‎ 7 changes history −347 [Sarah L. Perry‎ (7×)]
     
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21 May 2024

     19:23  Microfluidic Vasculature for Cell Culture - Lilin Zhao, Melissa Deschamps, Marissa Burgess, Matthew Tiller, Jacob Kellett, Tina Leong, Katelyn Mullen, Daniel Bell, Anna Comperchio, Evelyn Moore‎‎ 15 changes history −45 [Sarah L. Perry‎ (15×)]
     
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  • See this page for a draft implementation.
  • See this page for a draft on model implementations following CellML 1.1.
  • See this page to access current discussion on the implementation.