Endy:PiP
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This page is for keeping track of the status of papers in the Endy writing queue.
Research Manuscripts
Barry #1: A simple, self-regulating network of orthogonal RNA polymerases and ribosomes in Escherichia coli, or equivalent
- Authors: Barry, Drew
- Status: RNA work failed. Microscopy adequate
- Writing: First outline complete, BC to draft text. Figures discussed, drafts exist.
- Project page & Paper page.
- Goal: Submit by end October, 2008. Complete draft to DE by first week of October.
Jason #1: Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites
- Authors: JK & DE
- Status: reviews received, JK and DE struggling through standards theory
- Open questions
- New paragraph level outline
- Goal: Resubmit by 15 September
Jason #2: Programmed selection and preferential promotion of disadvantaged bacteria in a microfluidic sortostat, or equivalent
- Authors: JK & DE
- Status: Modeling scope, data analysis and writing needs to be completed
- OWW Page
- Goal: Jason?
Reshma #1: Using genetically encoded odorant reporters to engineer bacteria that smell like wintergreen and banana
- Authors: RS & DE
- Status: reviews received, revision complete, sent to RC3 for his comments
- Goal: submitted
Reshma #2: Signal levels, load, and error rates in engineered transcriptional devices
- Authors: RS & DE
- Status: RS working on figures
- Goal: Submit by end of August
Samantha #1: Controlling cellular location by engineering phosphorylation
- Authors: SS & DE
- Status: In review at PLoS Biology
- Goal: Have in press in 2008
Samantha #2: Signals and specifications for a family of phosphorylation-dependent devices, or equivalent
- Authors: SS & DE
- Status: Outline and structure finalized, SS leading writing
- Goal: Submit by end of August
Ty #1: Tools for making systems biology models more scientific
- Authors: TT, DE
- Status: DE to do final edit, send to RB and TT for final approval
- Goal: Submit by end of August
Ty #2: Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range
- Authors: TT, DE
- Status: Submitted to MSB
- Goal: Get published ASAP.
Ty #3: Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae: A Comprehensive Analysis
- Authors: TT, DE
- Status: JT and TT to edit (not working well, what should DE do?)
- Goal: Submit by ???
Sri #1: Measures & models of phage T7 mRNA
- Authors: HK, DE, SK
- Status: Sri needs to provide Fig 4, Drew needs to edit
- Goal: Submit by end of August
Drew #1: A common signal carrier for genetic devices
- Authors: Austin, Drew, Tom, Randy, Samantha
- Status: DE to expand and rewrite
- Goal: Submit by end of August
Drew #2: Free as in phosphoramidites, or equivalent
- Authors: DG and DE
- Status: DE to write
- Goal: Submit by end of August
BOOKS
DE #1:CoTS
- Authors: DE
- Status: DE outlining
- Goal: Proposal by end of August
DE #2:I2SB
- Authors: DE
- Status: DE outlining
- Goal: Outline by end of August
BLANK
Blank #1: Title, or equivalent
- Authors: your names here
- Status: your names here
- Goal: Submit by some date