Silver:Restriction digest protocol

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Revision as of 07:41, 23 September 2009 by Vaishnavi Ananth (talk | contribs) (New page: <html><h2>Solutions/reagents:</h2><ul type="circle"><li> <a name="restriction enzyme1">restriction enzyme1 <i><br><tab><div style="margin-right: 600px;">(20 units/µl)</div></i></a></li><l...)
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Solutions/reagents:

  • <a name="restriction enzyme1">restriction enzyme1
    <tab>
    (20 units/µl)
    </a>
  • <a name="restriction enzyme2">restriction enzyme2
    <tab>
    (20 units/µl)
    </a>
  • 10X restriction buffer
  • 10X BSA
  • PCR product DNA
  • distilled H2O
  • <a name="BioBrick vector">BioBrick vector
    <tab>
    (BBa_V0002 or BBa_V0100)
    </a>
  • <a name="CIP">CIP
    <tab>
    (10 units/µl)
    </a>

Parameters:

  • V - Volume of PCR product DNA obtained (µl).
  • C - Concentration of BioBrick vector (µg/µl).

Equipment:

  • Incubator
  • Reaction tubes

Steps:

  1. Digestion of PCR product
    Use the following table as a checklist for preparing the reaction:

    <thead></thead><tbody></body>
     PCR product DNA10X BSA10X restriction bufferrestriction enzyme1restriction enzyme2distilled H2O
    Restriction Digest - PCR productV3.5 µl3.5 µl0.2 µl0.2 µlMake up the volume to 35 µl
    Note: keep the glycerol concentration below 5%, the volume of both restriction enzymes added should not exceed 5% of the total reaction volume.
  2. Incubate at 37°C for at least 1 hr.
    Incubation overnight is better.
  3. Purify digested insert using PCR product purification kit.
  4. Digestion of BioBrick vector: Recommended procedure
    Use the following table as a checklist for preparing the reaction:

    <thead></thead><tbody></body>
     BioBrick vector10X BSA10X restriction bufferrestriction enzyme1restriction enzyme2distilled H2O
    Restriction Digest - vector7/C1 µl1 µl0.2 µl0.2 µlMake up the volume to 10 µl
    Note: keep the glycerol concentration below 5%, the volume of both restriction enzymes added should not exceed 5% of the total reaction volume.
  5. Incubate at 37°C for 12 hrs(overnight).
  6. Add 0.1 µl of <a href="#CIP" >CIP</a>.
    Incubate at 37°C for 1 hr.

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