20.109(S15): Spring 2015 schedule: Difference between revisions

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| [[User:Shannon K. Alford | SKH]]
| [[User:Shannon K. Alford | SKH]]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Lab tour | Orientation]]
| [[20.109(S15):Lab tour | Orientation]]
| [[Media:20.109 OrientLect(S14).pdf | Introductory Lecture (PDF)]]<br>[[Media:M1D0_F14_SKH_prelab_final.pdf | T/R Pre-Lab]]<br>[[Media:S14_D0-ANS.pdf| W/F Pre-Lab]]
|  
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| colspan="7" |
| colspan="7" |
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| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Microbial DNA extraction (Day1) | Microbial DNA extraction]]
| [[20.109(S15):Microbial DNA extraction (Day1) | Microbial DNA extraction]]
|<font color=green>lab orientation quiz</font color><br>[[Media:S14_M1D1-Lecture.pdf | Lecture]]<br>[[Media: S14M1-JonR_Lecture1_Outline.doc | L1 Notes]]<br>[[Media:M1D1_S14_lab_SKH_final.pdf | T/R Pre-Lab]] <br>[[Media:S14_M1D1-ANS.pdf | W/F Pre-Lab]]
|<font color=green>lab orientation quiz</font color><br
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| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Diagnostic primer design (Day2) | Diagnostic primer design]]
| [[20.109(S15):Diagnostic primer design (Day2) | Diagnostic primer design]]
| [[Media:S14_M1D2-Lecture.pdf | Lecture]]<br>[[Media: S14M1-JonR_Lecture2_Outline.doc | L2 Notes]]<br>[[Media:M1D2_S14_SKH_final.pdf | T/R Pre-lab]]<br>[[Media:S14_M1D2-ANS.pdf | W/F Pre-Lab]]
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| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):16S PCR and paper discussion (Day3)| 16S PCR and paper discussion]]
| [[20.109(S15):16S PCR and paper discussion (Day3)| 16S PCR and paper discussion]]
| <font color=green>lab quiz</font color><br>[[Media:S14_M1D3-Lecture.pdf | Lecture]]<br>[[Media: S14M1-JonR_Lecture3_Outline.docx | L3 Notes]]<br>[[Media:M1D3_S14_SKH_final.pdf | T/R Pre-lab]]<br>[[Media:S14_M1D3-ANS.pdf | W/F Pre-Lab]]<br>[[Media:20.109_Presentation-basics_S14_Atissa.pdf | WAC lecture, talks]]
| <font color=green>lab quiz</font color><br>
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| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):DNA cloning (Day4)| DNA cloning]]
| [[20.109(S15):DNA cloning (Day4)| DNA cloning]]
| [[Media: S14M1-JonR_Lecture4_Outline.doc | L4 Notes]]<br>[[Media:M1D4_S14_SKH_final.pdf | T/R Pre-lab]]<br>[[Media:S14_M1D4-ANS.pdf | W/F Pre-Lab]]<br>[[Media:20.109_FIG_CAPTIONS_S14_Marilee.pdf | WAC lecture, figures]]
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| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):DNA sequencing (Day5)| DNA sequencing]]
| [[20.109(S15):DNA sequencing (Day5)| DNA sequencing]]
|<font color=green>lab quiz</font color><br>[[Media:S14_M1D5-Lecture.pptx.pdf | Lecture]]<br>[[Media:Module1_Lecture5_LectureOutline.docx | L5 notes]]<br>[[Media:S14_M1D5_AKR_TR_filled.pdf | T/R Pre-lab]]<br>[[Media:S14_M1D5_AKR_WF_filled.pdf | W/F Pre-lab]]
|<font color=green>lab quiz</font color><br>
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| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Journal club I (Day6)| Journal club I]]
| [[20.109(S15):Journal club I (Day6)| Journal club I]]
| [[Media:S14_M1D6-Lecture.pptx.pdf | Lecture]]<br>[[Media:Module1_Lecture6_LectureOutline.doc | L6 notes]]
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| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Phylogenetic and primer analyses (Day7)| Phylogenetic and primer analyses]]
| [[20.109(S15):Phylogenetic and primer analyses (Day7)| Phylogenetic and primer analyses]]
| [[Media: S14_M1D7-Lecture.pptx.pdf | Lecture]]<br>[[Media:M1D7_S14_SKH_final.pdf|T/R Pre-lab]]<br>[[Media:S14_M1D7-ANS.pdf | W/F Pre-Lab]]
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|[http://web.mit.edu/be/people/runstadler.shtml JR]
|[http://web.mit.edu/be/people/runstadler.shtml JR]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Journal club II (Day8)| Journal club II]]
| [[20.109(S15):Journal club II (Day8)| Journal club II]]
|<font color=green>lab quiz</font color><br>[[Media: S14_M1D8-Lecture-AdditionalSlides.pptx.pdf | Lecture]]<br>[[Media: S14M1-JonR_Lecture7-8_Outline.doc | L7/8 notes]]<br>[[Media:20.109_Abstract_SP14.pdf | WAC lecture, abstracts]]
|<font color=green>lab quiz</font color><br>
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| colspan="7" |  
| colspan="7" |  
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| [http://web.mit.edu/be/people/samson.shtml LS]
| [http://web.mit.edu/be/people/samson.shtml LS]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Introduction to cell strains and plating (Day1)| Introduction to cell strains and plating]]
| [[20.109(S15):Introduction to cell strains and plating (Day1)| Introduction to cell strains and plating]]
| [[Media:20109_S14-M2Lec1_LSamson.pdf | Lecture]]<br>[[Media:M2D1_S14_SKH_final.pdf|T/R Prelab]]<br>[[Media:S14_M2D1-ANS.pdf | W/F Pre-Lab]]<br>[[Media:20.109_IMRD_SP14a.pdf | WAC lecture, IMRD]]<br><font color = CC0000><b>Draft Mod 1 Abstract and Summary Due WED 1 PM</b></font color><br>
| <br><font color = CC0000><b>Draft Mod 1 Abstract and Summary Due WED 1 PM</b></font color><br>
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| [http://web.mit.edu/be/people/samson.shtml LS]
| [http://web.mit.edu/be/people/samson.shtml LS]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Begin Western protein analysis (Day2)| Begin Western protein analysis]]
| [[20.109(S15):Begin Western protein analysis (Day2)| Begin Western protein analysis]]
|[[Media:20109_S14-M2Lec2_LSamson.pdf | Lecture]]<br>[[Media:M2D2_S14_SKH_final.pdf|T/R Prelab]]<br>[[Media:S14_M2D2-ANS.pdf | W/F Pre-Lab]]
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| [http://web.mit.edu/be/people/samson.shtml LS]
| [http://web.mit.edu/be/people/samson.shtml LS]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14): Choose system conditions and paper discussion (Day3)| Choose system conditions and paper discussion]]
| [[20.109(S15): Choose system conditions and paper discussion (Day3)| Choose system conditions and paper discussion]]
|<br><font color = CC0000><b>Mod 1 Memo Due</b></font color><br><font color=green>lab quiz</font color><br>[[Media:20109_S14-M2Lec3_LSamson.pdf | Lecture]]<br>[[Media:M2D3_S14_SKH_final.pdf | T/R Pre-Lab]]<br>[[Media:S14_M2D3-ANS.pdf | W/F Pre-Lab]]
|<br><font color = CC0000><b>Mod 1 Memo Due</b></font color><br><font color=green>lab quiz</font color><br>
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| [http://web.mit.edu/be/people/samson.shtml LS]
| [http://web.mit.edu/be/people/samson.shtml LS]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Complete Western and prepare damaged DNA (Day4)| Complete Western and prepare damaged DNA]]
| [[20.109(S15):Complete Western and prepare damaged DNA (Day4)| Complete Western and prepare damaged DNA]]
| [[Media:20109_S14-M2Lec4_LSamson.pdf | Lecture]]<br>[[Media:M2D4_S14_SKH_final.pdf| T/R Pre-lab]]<br>[[Media:S14_M2D4-ANS.pdf | W/F Pre-Lab]]
|  
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| [http://web.mit.edu/be/people/samson.shtml LS]
| [http://web.mit.edu/be/people/samson.shtml LS]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Cell preparation for DNA repair assays (Day5)| Cell preparation for DNA repair assays]]
| [[20.109(S15):Cell preparation for DNA repair assays (Day5)| Cell preparation for DNA repair assays]]
|<font color=green>lab quiz</font color><br>[[Media:20109_S14-M2Lec5_LSamson.pdf | Lecture]]<br>[[Media:M2D5_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M2D5-ANS.pdf | W/F Pre-Lab]]
|<font color=green>lab quiz</font color><br>
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| [http://web.mit.edu/be/people/samson.shtml LS]
| [http://web.mit.edu/be/people/samson.shtml LS]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):DNA repair assays(Day6)| DNA repair assays]]
| [[20.109(S15):DNA repair assays(Day6)| DNA repair assays]]
|[[Media:20109_S14-M2Lec6_LSamson.pdf | Lecture]]<br>[[Media:M2D6_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M2D6-ANS.pdf | W/F Pre-Lab]]<br><font color = CC0000><b>Final Mod 1 Abstract and Summary Due</b></font color><br>
|<br><font color = CC0000><b>Final Mod 1 Abstract and Summary Due</b></font color><br>
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| [http://web.mit.edu/be/people/samson.shtml LS]
| [http://web.mit.edu/be/people/samson.shtml LS]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Data analysis (Day7)| Data analysis]]
| [[20.109(S15):Data analysis (Day7)| Data analysis]]
|<font color=green>lab quiz</font color><br>[[Media:ZDN_Module_Lecture_4-8-14.pdf| Lecture]]<br>[[Media:M2D7_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M2D7-ANS.pdf | W/F Pre-Lab]]
|<font color=green>lab quiz</font color><br>
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| 3
| 3
| 1
| 1
| Thur/Fri Apr 9/10
| Thur/Fri Apr 9/10
| [[User:AgiStachowiak | ANS]]
| [[User:Abelcher| AB]]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Design experiment (Day1)| Design experiment]]
|  
| [[Media: 20109_S14-M3Lec1_AStachowiak.pdf | Lecture]]<br>[[Media: M3D1_S14_SKH_final.pdf | T/R Pre-Lab]] <br>[[Media:S14_M3D1-ANS.pdf | W/F Pre-Lab]]
|  
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| 3
| 3
| 2
| 2
| Tue/Wed Apr 14/15  
| Tue/Wed Apr 14/15  
| [[User:AgiStachowiak | ANS]]
| [[User:Abelcher| AB]]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Initiate cell culture (Day2)| Initiate cell culture]]
|  
| <font color=green>lab quiz</font color><br>[[Media: 20109_S14-M3Lec2_AStachowiak.pdf | Lecture]]<br>
| <font color=green>lab quiz</font color><br>
|--
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| 3
| 3
| 3
| 3
| Thur/Fri Apr 16/17
| Thur/Fri Apr 16/17
| [[User:AgiStachowiak | ANS]]
| [[User:Abelcher| AB]]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Testing cell viability (Day3)| Testing cell viability]]
|  
| [[Media: 20109_S14-M3Lec3_AStachowiak.pdf | Lecture]]<br>
|  
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| 4
| 4
| Thu/Fri Apr 23/24  
| Thu/Fri Apr 23/24  
| [[User:AgiStachowiak | ANS]]
| [[User:Abelcher| AB]]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Preparing cells for analysis (Day4)| Preparing cells for analysis]]
|
| <font color=green>lab quiz</font color><br>[[Media: 20109_S14-M3Lec4_AStachowiak.pdf | Lecture]]<br>[[Media:M3D4_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M3D4-ANS.pdf | W/F Pre-Lab]]
| <font color=green>lab quiz</font color><br>
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| 5
| 5
| Thur/Fri Apr/May 30/1
| Thur/Fri Apr/May 30/1
| [[User:AgiStachowiak | ANS]]
| [[User:Abelcher| AB]]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Initiating transcript and protein assays (Day5)| Initiating transcript and protein assays]]
|  
| [[Media: 20109_S14-M3Lec5_AStachowiak.pdf | Lecture]]<br>[[Media:M3D5_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M3D5-ANS.pdf | W/F Pre-Lab]]
|  
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| 3
| 3
| 6
| 6
| Tue/Wed May 5/6
| Tue/Wed May 5/6
| [[User:AgiStachowiak | ANS]]
| [[User:Abelcher| AB]]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Transcript-level analysis (Day6)| Transcript-level analysis]]
|  
| <font color=green>lab quiz</font color><br>[[Media: 20109_S14-M3Lec6_AStachowiak.pdf | Lecture]]<br>[[Media:S14_M3D6-ANS-TR.pdf|T/R Pre-Lab]]<br>[[Media:S14_M3D6-ANS.pdf | W/F Pre-Lab]]
| <font color=green>lab quiz</font color><br>
|--
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| 3
| 3
| 7
| 7
| Thur/Fri May 7/8
| Thur/Fri May 7/8
| [[User:AgiStachowiak | ANS]]
| [[User:Abelcher| AB]]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Protein-level and wrap-up analysis (Day7)| Protein-level and wrap-up analysis]]
|  
| <br><font color = CC0000><b>Mod 3 Mini-report Due</b></font color><br>[[Media:M3D7_S14_SKH_final.pdf|T/R Pre-Lab]]<br>[[Media:S14_M3D7-ANS.pdf | W/F Pre-Lab]]
| <br><font color = CC0000><b>Mod 3 Mini-report Due</b></font color><br>
|--
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| 3
| 3
| 8
| 8
| Tue/Wed May 12/13
| Tue/Wed May 12/13
| [[User:AgiStachowiak | ANS]]
| [[User:Abelcher| AB]]
| [[User:| ]]
| [[User:| ]]
| [[20.109(S14):Student presentations (Day8)| Student presentations]]
| [[20.109(S15):Student presentations (Day8)| Student presentations]]
|  
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Revision as of 06:47, 8 November 2014


20.109(S15): Laboratory Fundamentals of Biological Engineering

Home        People        Schedule Spring 2015        Assignments        Lab Basics        OWW Basics       
DNA Engineering        System Engineering        Biomaterials Engineering              

MODULE DAY DATE LECTURER TA LAB NOTES
Tue/Wed Feb 3/4 SKH [[User:| ]] Orientation
1 1 Thur/Fri Feb 5/6 JR [[User:| ]] Microbial DNA extraction lab orientation quiz<br
1 2 Tue/Wed Feb 10/11 JR [[User:| ]] Diagnostic primer design
1 3 Thur/Fri Feb 12/13 JR [[User:| ]] 16S PCR and paper discussion lab quiz
President's Day Feb 16 No lab Feb 17 or Feb 18
1 4 Thur/Fri Feb 19/20 JR [[User:| ]] DNA cloning
1 5 Tue/Wed Feb 24/25 JR [[User:| ]] DNA sequencing lab quiz
1 6 Thur/Fri Feb 26/27 JR [[User:| ]] Journal club I
1 7 Tue/Wed Mar 3/4 JR [[User:| ]] Phylogenetic and primer analyses
1 8 Thur/Fri Mar 5/6 JR [[User:| ]] Journal club II lab quiz
2 1 Tue/Wed Mar 10/11 LS [[User:| ]] Introduction to cell strains and plating
Draft Mod 1 Abstract and Summary Due WED 1 PM
2 2 Thur/Fri Mar 12/13 LS [[User:| ]] Begin Western protein analysis
2 3 Tue/Wed Mar 17/18 LS [[User:| ]] Choose system conditions and paper discussion
Mod 1 Memo Due
lab quiz
2 4 Thur/Fri Mar 19/20 LS [[User:| ]] Complete Western and prepare damaged DNA
Spring Break Mar 23-27 No lab all week
2 5 Tue/Wed Mar/Apr 31/1 LS [[User:| ]] Cell preparation for DNA repair assays lab quiz
2 6 Thur/Fri Apr 2/3 LS [[User:| ]] DNA repair assays
Final Mod 1 Abstract and Summary Due
2 7 Tue/Wed Apr 7/8 LS [[User:| ]] Data analysis lab quiz
3 1 Thur/Fri Apr 9/10 AB [[User:| ]]
3 2 Tue/Wed Apr 14/15 AB [[User:| ]] lab quiz
3 3 Thur/Fri Apr 16/17 AB [[User:| ]]
Patriot's Day April 20-21 No lab Apr 21 or Apr 22
Mod 2 Report Due
3 4 Thu/Fri Apr 23/24 AB [[User:| ]] lab quiz
Tue/Wed Apr 28/29 No lecture or lab today.
3 5 Thur/Fri Apr/May 30/1 AB [[User:| ]]
3 6 Tue/Wed May 5/6 AB [[User:| ]] lab quiz
3 7 Thur/Fri May 7/8 AB [[User:| ]]
Mod 3 Mini-report Due
3 8 Tue/Wed May 12/13 AB [[User:| ]] Student presentations
Thur May 14 No lab session. Meet in 16-220 from 11am-1pm: feedback/discussion about class, then celebratory lunch etc.


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