Revision as of 21:12, 2 April 2013

Week 9 Assignment

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 ==Week 9 Assignment==
-#*How many genes have p value < 0.05?
+#P-Values less than .05
-*t=15 - 803
+#* t=15 – 803
-*t=30 - 1213
+#* t=30 – 1213
-*t=60 - 1042
+#* t=60 – 1042
-*t=90 - 672
+#* t=90 – 672
-*t=120 - 288
+#* t=120 – 288
+#P-Values less than .01
+#* t=15 – 203
+#* t=30 – 415
+#* t=60 – 273
+#* t=90 – 162
+#* t=120 – 36
+#P-Values less than .001
+#* t=15 – 24
+#* t=30 – 69
+#* t=60 – 33
+#* t=90 – 14
+#* t=120 – 5
+#P-Values less than .0001
+#* t=15 – 2
+#* t=30 – 8
+#* t=60 – 4
+#* t=90 – 0
+#* t=120 – 2
+=Bonferroni correction (<.05)=
+#t=15 – 0
+#t=30 – 1
+#t=60 – 0
+#t=90 – 0
+#t=120 – 0
+=AvgLogFC (Time = 30)=
+#p<.05 and positive – 681
+#p<.05 and negative – 532
+#p<.05 and FC >.25 – 668
+#p<.05 and FC <-.25 – 517
+=NSR1 Expression=
+#t=15
+#*P=.0042
+#*FC=1.568
+#t=30
+#*P=.0019
+#*FC=2.058
+#t=60
+#*P=.0462
+#*FC=1.665
+#t=90
+#*P=.1821
+#*FC=-.656
+#t=120
+#*P=.506
+#*FC=-.1399
+=Lowest P-Value=
+*YOR342C- Protein of unknown function
 {{Salman Ahmad}}