BME100 f2013:W1200 Group13 L4: Difference between revisions

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'''Thermal Cycler Program'''<br>
'''Thermal Cycler Program'''<br>
 
Stage 1: 95°C for 3 minutes-Double helix unwinds into one long strand<br>
Stage 2: (35 cycles of each)<br>
1. 95°C for 30 seconds-Double helix breaks apart into two strands<br>
2. 52°C for 30 seconds-Primers attach to target sequence<br>
3. 72°C for 30 seconds-DNA polymerase begins constructing new strand<br>
Stage 3: 4°C for 3 minutes-Keeps solution of pure taget sequence at stable temperature<br>


'''DNA Sample Set-up'''<br>
'''DNA Sample Set-up'''<br>
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| NC || 2R1 || 2R2 || 2R3
| NC || 2R1 || 2R2 || 2R3
|}
|}


'''DNA Sample Set-up Procedure'''
'''DNA Sample Set-up Procedure'''

Revision as of 13:21, 23 October 2013

BME 100 Fall 2013 Home
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Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3
Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6
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OUR TEAM

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LAB 1 WRITE-UP

Initial Machine Testing

The Original Design
(Add image of the full OpenPCR machine here, from the Week 9 exercise. Write a paragraph description for visitors who have no idea what this is)


Experimenting With the Connections

When we unplugged (part 3) from (part 6), the machine ... (did what? fill in your answer)

When we unplugged the white wire that connects (part 6) to (part 2), the machine ... (did what? fill in your answer)


Test Run

(Write the date you first tested Open PCR and your experience(s) with the machine)




Protocols

Thermal Cycler Program
Stage 1: 95°C for 3 minutes-Double helix unwinds into one long strand
Stage 2: (35 cycles of each)
1. 95°C for 30 seconds-Double helix breaks apart into two strands
2. 52°C for 30 seconds-Primers attach to target sequence
3. 72°C for 30 seconds-DNA polymerase begins constructing new strand
Stage 3: 4°C for 3 minutes-Keeps solution of pure taget sequence at stable temperature

DNA Sample Set-up

PC 1R1 1R2 1R3
NC 2R1 2R2 2R3

DNA Sample Set-up Procedure

  1. Step 1
  2. Step 2
  3. Step 3...


PCR Reaction Mix

  • What is in the PCR reaction mix?


DNA/ primer mix

  • What is in the DNA/ primer mix?





Research and Development

PCR - The Underlying Technology

(Add a write-up, essay-style, organized into paragrpahs with descriptive headers, based on the Q&A's from Section three of your worksheet)

(BONUS points: Use a program like Powerpoint, Word, Illustrator, Microsoft Paint, etc. to illustrate how primers bind to the cancer DNA template, and how Taq polymerases amplify the DNA. Screen-captures from the PCR video/ tutorial might be useful. Be sure to credit the sources if you borrow images.)