BME100 f2013:W900 Group17 L4: Difference between revisions

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'''Test Run'''
'''Test Run'''


(Write the date you first tested Open PCR and your experience(s) with the machine)<br>
The PCR machine was first used to run through a test cycle on October 23, 2013 at 9:56 am and stopped at 11:16 am for a total run of one hour and twenty minutes. During this time the machine ran without any major problems and in fact was very quiet throughout the cycles it went through. Also, the time to completion displayed on the computer monitor through the program was always within reasonable parameters given the average time it takes for the PCR machine to complete its ideal number of cycles. Given the time that the PCR machine in this experiment was allowed to operate, one hour and twenty minutes, it was able to complete 25 cycles in total with thirty six minutes being left of operation time as inficated by the timer. <br>





Revision as of 02:17, 30 October 2013

BME 100 Fall 2013 Home
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Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3
Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6
Course Logistics For Instructors
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OUR TEAM

Name: Abrar Bakhsh
Role: Protocol Planning
Name: Jeremy Becker
Role: Open PCR Machine Testing
Name: Luis Hernandez
Role: Research and Development
Name: Alison Llave
Role: Open PCR Machine Testing
Name: Naaz Maududi
Role: Research and Development

LAB 1 WRITE-UP

Initial Machine Testing

The Original Design
(Add image of the full OpenPCR machine here, from the Week 9 exercise. Write a paragraph description for visitors who have no idea what this is)


Experimenting With the Connections

When we unplugged (part 3) from (part 6), the machine ... (did what? fill in your answer)

When we unplugged the white wire that connects (part 6) to (part 2), the machine ... (did what? fill in your answer)


Test Run

The PCR machine was first used to run through a test cycle on October 23, 2013 at 9:56 am and stopped at 11:16 am for a total run of one hour and twenty minutes. During this time the machine ran without any major problems and in fact was very quiet throughout the cycles it went through. Also, the time to completion displayed on the computer monitor through the program was always within reasonable parameters given the average time it takes for the PCR machine to complete its ideal number of cycles. Given the time that the PCR machine in this experiment was allowed to operate, one hour and twenty minutes, it was able to complete 25 cycles in total with thirty six minutes being left of operation time as inficated by the timer.




Protocols

Thermal Cycler Program


DNA Sample Set-up

row 1 cell 1 row 1 cell 2 row 1 cell 3 row 1 cell 4
row 2 cell 1 row 2 cell 2 row 2 cell 3 row 2 cell 4


DNA Sample Set-up Procedure

  1. Step 1
  2. Step 2
  3. Step 3...


PCR Reaction Mix

  • What is in the PCR reaction mix?


DNA/ primer mix

  • What is in the DNA/ primer mix?





Research and Development

PCR - The Underlying Technology

(Add a write-up, essay-style, organized into paragrpahs with descriptive headers, based on the Q&A's from Section three of your worksheet)
Cancerous DNA will undergo an exponential growth that is shown in the images http://universe-review.ca/I11-50-PCR.jpg http://www.nature.com/scitable/nated/content/19492/pierce_18_19_large_2.jpg

https://www.google.com/searchq=process+of+pcr&source=lnms&tbm=isch&sa=X&ei=yFRwUqGTOIKxiwKY64CADw&sqi=2&ved=0CAcQ_AUoAQ&biw=1951&bih=961#q=process+of+pcr+amplification&tbm=isch&facrc=_&imgdii=_&imgrc=DFzRQQKNLcbzVM%3A%3BpKI0UaXZHG8oRM%3Bhttp%253A%252F%252Fwww.nature.com%252Fscitable%252Fnated%252Fcontent%252F19492%252Fpierce_18_19_large_2.jpg%3Bhttp%253A%252F%252Fwww.nature.com%252Fscitable%252Ftopicpage%252Fthe-biotechnology-revolution-pcr-and-the-use-553%3B700%3B323